Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   DL538_RS02840 Genome accession   NZ_CP029609
Coordinates   530219..530653 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis subsp. subtilis strain G7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 525219..535653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DL538_RS02810 (DL538_02800) ydaD 525866..526726 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  DL538_RS02815 (DL538_02805) lyxE 526742..527245 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  DL538_RS02820 (DL538_02810) ydaF 527333..527884 (+) 552 WP_041850710.1 GNAT family protein -
  DL538_RS02825 (DL538_02815) ydaG 527962..528384 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  DL538_RS02830 (DL538_02820) amj 528890..529699 (+) 810 WP_003234394.1 lipid II flippase Amj -
  DL538_RS02835 (DL538_02825) ydzA 529744..530034 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  DL538_RS02840 (DL538_02830) lrpC 530219..530653 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  DL538_RS02845 (DL538_02835) topB 530718..532901 (+) 2184 WP_041850711.1 DNA topoisomerase III -
  DL538_RS02850 (DL538_02840) ephJ 533104..534192 (+) 1089 WP_041850712.1 hypothetical protein -
  DL538_RS02855 (DL538_02845) epsK 534173..535024 (+) 852 WP_131227128.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=254882 DL538_RS02840 WP_003246585.1 530219..530653(+) (lrpC) [Bacillus subtilis subsp. subtilis strain G7]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=254882 DL538_RS02840 WP_003246585.1 530219..530653(+) (lrpC) [Bacillus subtilis subsp. subtilis strain G7]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCCGTAGAAGATTTCATTAACAAAACATCGCCATACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1