Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   DF184_RS07315 Genome accession   NZ_CP029398
Coordinates   1468237..1468887 (-) Length   216 a.a.
NCBI ID   WP_024384330.1    Uniprot ID   -
Organism   Streptococcus suis strain HN105     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1463237..1473887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF184_RS07310 (DF184_07310) - 1466875..1468236 (-) 1362 WP_024384329.1 HAMP domain-containing sensor histidine kinase -
  DF184_RS07315 (DF184_07315) scnR 1468237..1468887 (-) 651 WP_024384330.1 response regulator transcription factor Regulator
  DF184_RS07320 (DF184_07320) ccpA 1469955..1470959 (-) 1005 WP_004298830.1 catabolite control protein A Regulator
  DF184_RS07325 (DF184_07325) - 1471169..1472254 (+) 1086 WP_024376342.1 Xaa-Pro peptidase family protein -
  DF184_RS07330 (DF184_07330) - 1472609..1473665 (-) 1057 Protein_1379 IS630 family transposase -
  DF184_RS07335 (DF184_07335) - 1473713..1473817 (-) 105 WP_079270828.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24594.72 Da        Isoelectric Point: 4.9774

>NTDB_id=253189 DF184_RS07315 WP_024384330.1 1468237..1468887(-) (scnR) [Streptococcus suis strain HN105]
MAKILVLEDDLVINQVVCEFLRDSGHDVLPLFDGGQALEEIQKMEFDLLILDIMVPTMTGLELLTAVRKISSVPVLVLTA
LSDEYTQLISFNQDISDFVTKPFSPLVLMKRIENILKVKHVDETIRIGDILIDQQAGYVHVGEQEVQLTKKEYEVFLYLA
KRKGNIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLHLKTVVGRGYQIEEG

Nucleotide


Download         Length: 651 bp        

>NTDB_id=253189 DF184_RS07315 WP_024384330.1 1468237..1468887(-) (scnR) [Streptococcus suis strain HN105]
ATGGCAAAAATTTTAGTATTAGAAGATGATTTAGTTATTAATCAGGTAGTCTGTGAATTTTTAAGAGATAGTGGTCACGA
TGTTTTACCTCTATTTGACGGTGGACAGGCATTAGAAGAAATCCAGAAAATGGAATTTGATCTGCTTATTTTGGATATTA
TGGTGCCGACGATGACAGGATTGGAGTTATTGACAGCAGTTCGGAAAATTTCATCTGTTCCAGTATTGGTTTTGACTGCT
TTAAGTGATGAGTATACTCAATTAATTAGCTTTAATCAGGATATAAGTGATTTTGTGACAAAGCCGTTTTCACCTCTTGT
TTTAATGAAGAGAATTGAAAATATTTTAAAAGTAAAACATGTGGATGAGACTATACGAATAGGTGACATCCTTATTGATC
AACAGGCTGGCTATGTTCATGTAGGGGAGCAGGAAGTACAGTTAACGAAGAAAGAGTATGAGGTCTTCCTCTACTTGGCA
AAAAGAAAAGGTAATATTGTGAGTCGAGATAATCTAATGATGGGAATTTGGGGGTATACAGAATTGGATAGTCGTGTGTT
AGATAATCATATTAAAAATATTCGTAAAAAGTTGCCTAGCTTACACTTAAAAACGGTAGTTGGTCGTGGTTACCAAATTG
AAGAGGGTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(144-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

36.937

100

0.38