Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   DF184_RS02970 Genome accession   NZ_CP029398
Coordinates   580939..581622 (+) Length   227 a.a.
NCBI ID   WP_002936735.1    Uniprot ID   -
Organism   Streptococcus suis strain HN105     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 575939..586622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF184_RS02950 (DF184_02950) - 576023..577534 (+) 1512 WP_109371237.1 ABC transporter permease/substrate-binding protein -
  DF184_RS02955 (DF184_02955) - 577544..578305 (+) 762 WP_074391531.1 nuclear transport factor 2 family protein -
  DF184_RS02960 (DF184_02960) - 578450..579574 (+) 1125 WP_109371239.1 aminotransferase -
  DF184_RS02965 (DF184_02965) - 579588..580769 (-) 1182 WP_109371241.1 DUF2974 domain-containing protein -
  DF184_RS02970 (DF184_02970) braR 580939..581622 (+) 684 WP_002936735.1 response regulator transcription factor Regulator
  DF184_RS02975 (DF184_02975) - 581615..582607 (+) 993 WP_074391528.1 sensor histidine kinase -
  DF184_RS02980 (DF184_02980) - 582703..583461 (+) 759 WP_074391527.1 ABC transporter ATP-binding protein -
  DF184_RS02985 (DF184_02985) - 583463..585466 (+) 2004 WP_074391526.1 FtsX-like permease family protein -
  DF184_RS02990 (DF184_02990) - 585580..585819 (+) 240 WP_162564086.1 hypothetical protein -
  DF184_RS02995 (DF184_02995) - 585816..586133 (+) 318 WP_024408398.1 PadR family transcriptional regulator -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26523.77 Da        Isoelectric Point: 4.6132

>NTDB_id=253157 DF184_RS02970 WP_002936735.1 580939..581622(+) (braR) [Streptococcus suis strain HN105]
MQKILLIEDDKTISQLVAKNLINWGYQVQEVKDFQMVLEQMEEFQPHLILLDIGLPFFNGYYWCQEIRKTSRVPIMFLSS
HDQPMDIVMAINMGADDYVTKPFEMTVLLAKIQGLLRRTYDFVGEQSLLWFEEISLDLKTMQVSYGQVVEELTRNEFQIL
RVLFEHGKEVVSREELMRELWNSDIFVDDNTLSVNIARLRKKLAELGLPDVIATKKGVGYGLVWTHE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=253157 DF184_RS02970 WP_002936735.1 580939..581622(+) (braR) [Streptococcus suis strain HN105]
ATGCAGAAAATTCTTCTTATCGAGGATGATAAAACGATTAGCCAACTAGTTGCTAAAAACTTGATAAACTGGGGTTACCA
GGTGCAAGAGGTCAAGGATTTTCAGATGGTTTTGGAACAGATGGAAGAGTTTCAGCCCCATTTGATTTTACTGGATATCG
GCCTGCCTTTTTTCAATGGCTATTACTGGTGTCAGGAAATTCGCAAGACATCCCGTGTGCCTATTATGTTTCTGTCTTCC
CATGACCAGCCAATGGATATTGTTATGGCGATCAATATGGGGGCGGATGACTATGTGACCAAGCCCTTTGAAATGACGGT
TCTCCTGGCCAAAATACAGGGGCTTCTCAGAAGAACCTATGACTTTGTCGGCGAACAAAGTTTACTCTGGTTTGAGGAGA
TTTCCCTAGACCTAAAGACCATGCAGGTGTCTTATGGACAGGTTGTGGAAGAACTGACGCGAAATGAATTTCAGATTTTA
CGGGTGCTTTTTGAACATGGCAAGGAAGTGGTCAGTCGCGAGGAGCTGATGAGAGAACTCTGGAACAGTGATATTTTTGT
GGATGACAATACCCTGTCGGTTAACATCGCTCGCCTGCGTAAGAAATTGGCAGAACTGGGTCTGCCAGATGTGATTGCGA
CCAAGAAAGGAGTAGGCTACGGCCTGGTGTGGACACATGAATAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-221)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

48.165

96.035

0.463
  vicR Streptococcus mutans UA159

39.13

100

0.396
  micA Streptococcus pneumoniae Cp1015

37.991

100

0.383

Multiple sequence alignment