Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CS348_RS15160 Genome accession   NZ_CP024165
Coordinates   2909141..2909746 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Gaminara strain CFSAN070644     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2904141..2914746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS348_RS15145 (CS348_15120) helD 2904358..2906412 (-) 2055 WP_079985094.1 DNA helicase IV -
  CS348_RS15150 (CS348_15125) - 2906536..2906982 (+) 447 WP_001261222.1 YccF domain-containing protein -
  CS348_RS15155 (CS348_15130) yccS 2907001..2909154 (+) 2154 WP_023230293.1 YccS family putative transporter -
  CS348_RS15160 (CS348_15135) sxy/tfoX 2909141..2909746 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  CS348_RS15165 (CS348_15140) sulA 2909963..2910472 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  CS348_RS15170 (CS348_15145) ompA 2910829..2911881 (+) 1053 WP_001562588.1 porin OmpA -
  CS348_RS15175 (CS348_15150) matP 2911953..2912405 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  CS348_RS15180 (CS348_15155) - 2912591..2914351 (+) 1761 WP_000156458.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=252662 CS348_RS15160 WP_001202375.1 2909141..2909746(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Gaminara strain CFSAN070644]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=252662 CS348_RS15160 WP_001202375.1 2909141..2909746(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Gaminara strain CFSAN070644]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTGCGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACAGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment