Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   SAB_RS08110 Genome accession   NC_007622
Coordinates   1638623..1639309 (-) Length   228 a.a.
NCBI ID   WP_000403096.1    Uniprot ID   Q2YT78
Organism   Staphylococcus aureus RF122     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1633623..1644309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAB_RS08070 (SAB1514c) rpmA 1634464..1634748 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  SAB_RS08075 (SAB1515c) - 1634760..1635080 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  SAB_RS08080 (SAB1516c) rplU 1635086..1635394 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  SAB_RS08085 (SAB1517c) mreD 1635561..1636091 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  SAB_RS08090 (SAB1518c) mreC 1636091..1636933 (-) 843 WP_000911041.1 rod shape-determining protein MreC -
  SAB_RS08095 - 1637131..1637250 (-) 120 WP_000840603.1 hypothetical protein -
  SAB_RS08100 (SAB1519c) - 1637324..1637797 (-) 474 WP_001236739.1 DUF4930 family protein -
  SAB_RS14530 - 1637957..1638154 (+) 198 WP_000025835.1 hypothetical protein -
  SAB_RS08105 (SAB1520c) - 1638271..1638555 (-) 285 WP_000171863.1 hypothetical protein -
  SAB_RS08110 (SAB1521c) ysxA/radC 1638623..1639309 (-) 687 WP_000403096.1 RadC family protein Machinery gene
  SAB_RS08115 (SAB1522c) - 1639288..1640014 (-) 727 Protein_1580 prepilin peptidase -
  SAB_RS08125 (SAB1523c) - 1640282..1641553 (-) 1272 WP_001108350.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  SAB_RS08130 (SAB1524c) - 1641566..1644196 (-) 2631 WP_000425339.1 valine--tRNA ligase -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25308.17 Da        Isoelectric Point: 6.2400

>NTDB_id=25227 SAB_RS08110 WP_000403096.1 1638623..1639309(-) (ysxA/radC) [Staphylococcus aureus RF122]
MEIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFLSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKESCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKESGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide


Download         Length: 687 bp        

>NTDB_id=25227 SAB_RS08110 WP_000403096.1 1638623..1639309(-) (ysxA/radC) [Staphylococcus aureus RF122]
TTGGAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTTGAGTATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCTATT
ACATTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAAGCTGTGTTTTTAAAGGTACATTAAATAGTTCAATTGTACATCCACGCGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGAGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACGAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(103-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

51.339

98.246

0.504
  radC Streptococcus gordonii str. Challis substr. CH1

39.908

95.614

0.382
  radC Streptococcus pneumoniae TIGR4

40.566

92.982

0.377
  radC Streptococcus pneumoniae R6

40.094

92.982

0.373
  radC Streptococcus pneumoniae D39

40.094

92.982

0.373