Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DEH83_RS08625 Genome accession   NZ_CP029207
Coordinates   1701901..1703649 (+) Length   582 a.a.
NCBI ID   WP_255776603.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1696901..1708649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS08605 (DEH83_08640) yihA 1697370..1697957 (+) 588 WP_003068868.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  DEH83_RS08610 (DEH83_08645) - 1698282..1698989 (+) 708 WP_003068871.1 glucosaminidase domain-containing protein -
  DEH83_RS08615 (DEH83_08650) - 1699165..1699962 (+) 798 WP_048800392.1 formate/nitrite transporter family protein -
  DEH83_RS08620 (DEH83_08655) - 1700175..1701911 (+) 1737 WP_255776602.1 ABC transporter ATP-binding protein -
  DEH83_RS08625 (DEH83_08660) rcrQ 1701901..1703649 (+) 1749 WP_255776603.1 ABC transporter ATP-binding protein Regulator
  DEH83_RS08630 (DEH83_08665) - 1703767..1705302 (-) 1536 WP_255776604.1 ATP-binding cassette domain-containing protein -
  DEH83_RS08635 (DEH83_08670) - 1705678..1706418 (-) 741 WP_003032251.1 amino acid ABC transporter ATP-binding protein -
  DEH83_RS08640 (DEH83_08675) - 1706418..1708595 (-) 2178 WP_187327718.1 ABC transporter substrate-binding protein/permease -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 65039.25 Da        Isoelectric Point: 6.8356

>NTDB_id=252158 DEH83_RS08625 WP_255776603.1 1701901..1703649(+) (rcrQ) [Streptococcus constellatus strain TCV107]
MKTRYSKSSLQRLASDLLQQRWLVLLATVGTIIQVALTIYLPILIGNAVDSVLLPDASQHLFPILSKMGIVIVANTVVQW
LNPLIYNQLIYSYSQQLRNAVIQKIHHLPLAYLDRQGSGDLVSRLTTDVEQLNNGLLMVFNQFFVGVLTIFVTIVTMARI
DFFMMILVLLLTPLSMLIADFIARKSYKLFQKQTTARGLQTQFIEESLSQESLIQSFNAQEQFIANFTKGNESYADYSQE
AIFYSSTVNPATRFVNALIYAMIVGFGAARIINGSSFTVGQLVTFLNYVNQYTKPFNDISSVMAELQSALACAERLYTIL
DEKELVEIGKEELTSETIFGAIRFEHICFGYEKNKPLIHDLNMTIPAGSKVAIVGPTGAGKSTLINLLMRFYNVDAGKIK
LDDRDITNYTRVSFRRQFGMVLQETWLKKTTIHDNIAFGRPEASQEEVIAAAKAANAHFFIQQLPNGYDTYLADAGDSLS
QGQRQLLTIARVFLAVPKILILDEATSSIDTRTEALIQKAFNNLMVGRTSFIIAHRLSTIQNADIILVLVDGDIVEHGSH
QELMQAKGIYYQMQTAQGSLGI

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=252158 DEH83_RS08625 WP_255776603.1 1701901..1703649(+) (rcrQ) [Streptococcus constellatus strain TCV107]
ATGAAAACTAGATATTCTAAAAGTAGTTTGCAACGCCTTGCAAGTGACTTATTACAGCAACGTTGGCTTGTCCTATTAGC
CACAGTTGGAACGATTATTCAGGTTGCCTTGACCATTTATTTGCCGATTTTAATTGGAAATGCAGTTGATAGTGTTTTAC
TTCCCGATGCAAGTCAGCATTTGTTTCCAATTCTTTCAAAAATGGGGATTGTAATTGTTGCCAATACAGTAGTTCAATGG
CTCAATCCTTTAATCTATAATCAGTTGATTTATAGTTATAGTCAGCAACTTCGTAATGCTGTCATTCAAAAAATTCATCA
TCTTCCCTTGGCTTATCTTGATCGTCAAGGAAGTGGTGATTTAGTGAGTCGCTTAACAACGGATGTGGAGCAGCTAAATA
ATGGTCTGCTCATGGTCTTCAATCAGTTTTTTGTGGGTGTGTTGACCATTTTTGTAACGATTGTGACAATGGCAAGGATT
GACTTTTTCATGATGATATTAGTCTTGCTTTTAACCCCTTTATCCATGCTAATTGCAGACTTTATCGCTCGTAAAAGCTA
CAAGTTGTTTCAAAAACAGACAACAGCTCGGGGGCTTCAGACACAATTTATCGAAGAAAGTCTCTCTCAGGAAAGTTTGA
TTCAAAGTTTTAATGCTCAAGAGCAGTTCATTGCGAACTTTACAAAGGGGAATGAAAGCTATGCGGATTATTCTCAGGAA
GCGATTTTCTATTCCTCGACTGTCAATCCAGCAACGCGTTTTGTAAATGCTCTTATCTATGCGATGATTGTAGGATTTGG
TGCAGCTCGTATCATCAACGGCTCTAGCTTTACGGTCGGACAATTAGTGACATTTTTAAATTATGTCAACCAATACACCA
AGCCTTTCAACGATATTTCGTCTGTCATGGCCGAATTGCAAAGCGCCCTTGCCTGTGCAGAGCGCTTGTACACGATTTTA
GATGAAAAGGAACTTGTAGAAATTGGAAAAGAAGAACTTACGAGTGAGACTATCTTTGGAGCTATTCGTTTTGAACATAT
ATGTTTTGGTTATGAAAAAAACAAGCCCTTGATTCATGATTTAAATATGACGATTCCTGCGGGAAGTAAAGTTGCTATTG
TTGGTCCAACCGGTGCTGGAAAATCAACTCTCATCAATCTCCTTATGCGATTTTATAATGTGGATGCGGGTAAGATAAAG
CTAGACGATCGAGATATTACAAATTATACTCGAGTGTCCTTCCGCCGGCAGTTTGGCATGGTGTTACAAGAAACGTGGCT
GAAAAAGACCACGATCCATGATAATATTGCTTTTGGGCGACCAGAAGCGAGTCAAGAAGAAGTGATAGCAGCTGCTAAAG
CAGCGAATGCACATTTTTTTATTCAGCAATTACCGAATGGTTATGACACTTATCTAGCGGACGCAGGTGACTCTTTATCA
CAAGGACAACGGCAGTTATTGACGATTGCGCGTGTTTTTCTAGCTGTACCTAAAATCTTAATTTTAGACGAAGCAACTTC
ATCCATTGATACACGAACCGAAGCGCTTATTCAAAAAGCTTTTAATAATCTAATGGTAGGAAGAACCAGTTTTATCATTG
CTCATCGTCTGTCTACTATTCAAAATGCAGATATCATCTTGGTTTTGGTTGATGGTGATATTGTCGAACATGGCAGTCAT
CAGGAGTTGATGCAAGCGAAAGGTATTTATTATCAAATGCAGACAGCGCAGGGAAGTTTGGGTATTTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(24-295)

ABC transporter (ABC_tran)

(359-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.108

100

0.392

Multiple sequence alignment