Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   DDT09_RS02195 Genome accession   NZ_CP029070
Coordinates   430746..431180 (+) Length   144 a.a.
NCBI ID   WP_003156263.1    Uniprot ID   A0A9P1JEY0
Organism   Bacillus amyloliquefaciens strain ALB69     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 425746..436180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT09_RS02165 (DDT09_02165) - 426420..427280 (+) 861 WP_021495102.1 SDR family oxidoreductase -
  DDT09_RS02170 (DDT09_02170) - 427293..427796 (+) 504 WP_061861863.1 D-lyxose/D-mannose family sugar isomerase -
  DDT09_RS02175 (DDT09_02175) - 427884..428507 (+) 624 WP_017419248.1 GNAT family protein -
  DDT09_RS02180 (DDT09_02180) - 428514..428936 (+) 423 WP_003156270.1 pyridoxamine 5'-phosphate oxidase family protein -
  DDT09_RS02185 (DDT09_02185) - 429433..430242 (+) 810 WP_014416933.1 lipid II flippase Amj family protein -
  DDT09_RS02190 (DDT09_02190) - 430280..430570 (-) 291 WP_007410179.1 DUF3817 domain-containing protein -
  DDT09_RS02195 (DDT09_02195) lrpC 430746..431180 (+) 435 WP_003156263.1 Lrp/AsnC family transcriptional regulator Machinery gene
  DDT09_RS02200 (DDT09_02200) - 431244..433430 (+) 2187 WP_003156261.1 DNA topoisomerase III -
  DDT09_RS02205 (DDT09_02205) - 433664..434749 (+) 1086 WP_061861864.1 hypothetical protein -
  DDT09_RS02210 (DDT09_02210) - 434730..435578 (+) 849 WP_014416937.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16474.10 Da        Isoelectric Point: 8.6776

>NTDB_id=250195 DDT09_RS02195 WP_003156263.1 430746..431180(+) (lrpC) [Bacillus amyloliquefaciens strain ALB69]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKINADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=250195 DDT09_RS02195 WP_003156263.1 430746..431180(+) (lrpC) [Bacillus amyloliquefaciens strain ALB69]
ATGAAACTAGATAATGTTGATCTGAGCATCATTAAAGAGCTGCAGCGGGACAGCCGCCTGTCCATGCGGGAGCTTGGCAG
AAAAATCAAATTGTCAGCCCCGTCCGTCACAGAGCGTGTCAGACAGCTTGAATCCTTCGGCGTTATTAAGCGCTATACAT
TGGACATTGATCAAAAAAAGATCGGACTTCCCGTTTCCTGCATTGTCGAAGCGACGGTTAAAAACGGAAAATACGATCAA
TTCAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGTTTTCGGGTCGCCGGCGCGGCGTGTTATATGCTGAAGAT
TAACGCGGACAGCCTGGAAACAATCGAACACTTCATTAACCGCACTTCTCCGTATGCTCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JEY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

81.56

97.917

0.799