Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   CQJ38_RS17980 Genome accession   NZ_CP023748
Coordinates   3591164..3591283 (+) Length   39 a.a.
NCBI ID   WP_015240778.1    Uniprot ID   -
Organism   Bacillus velezensis strain LABIM40     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3586164..3596283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQJ38_RS17955 (CQJ38_17955) - 3586514..3587026 (+) 513 Protein_3461 bacteriocin biosynthesis protein AlbG -
  CQJ38_RS17960 (CQJ38_17960) - 3587033..3588409 (-) 1377 WP_098081851.1 YncE family protein -
  CQJ38_RS17965 (CQJ38_17965) - 3588449..3589804 (-) 1356 WP_098081852.1 YncE family protein -
  CQJ38_RS17975 (CQJ38_17975) rapF 3590035..3591180 (+) 1146 WP_098081853.1 tetratricopeptide repeat protein Regulator
  CQJ38_RS17980 (CQJ38_17980) phrF 3591164..3591283 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  CQJ38_RS17985 (CQJ38_17985) - 3591481..3591684 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  CQJ38_RS17990 (CQJ38_17990) - 3591698..3591901 (+) 204 WP_007407641.1 hypothetical protein -
  CQJ38_RS17995 (CQJ38_17995) - 3591936..3592121 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  CQJ38_RS18000 (CQJ38_18000) - 3592307..3592588 (+) 282 WP_007407643.1 hypothetical protein -
  CQJ38_RS18005 (CQJ38_18005) - 3592632..3593144 (+) 513 WP_080130555.1 stage II sporulation protein M -
  CQJ38_RS18015 (CQJ38_18015) - 3593735..3593953 (-) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  CQJ38_RS18020 (CQJ38_18020) speB 3594122..3594994 (-) 873 WP_007407646.1 agmatinase -
  CQJ38_RS18025 (CQJ38_18025) speE 3595053..3595883 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4281.16 Da        Isoelectric Point: 10.0233

>NTDB_id=249724 CQJ38_RS17980 WP_015240778.1 3591164..3591283(+) (phrF) [Bacillus velezensis strain LABIM40]
MKLKYKLALTCLAISTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=249724 CQJ38_RS17980 WP_015240778.1 3591164..3591283(+) (phrF) [Bacillus velezensis strain LABIM40]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment