Detailed information NTG0247048

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AOY74_RS17360
• Genome accession: NZ_CP028754
• Coordinates: 3597176..3598168 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain A21
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3592176..3603168

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOY74_RS17340 (AOY74_18295)	ygbM	3592806..3593582 (+)	777	WP_021576411.1	HPr family phosphocarrier protein	-
AOY74_RS17345 (AOY74_18300)	ygbN	3593672..3595036 (+)	1365	WP_000104433.1	GntP family transporter	-
AOY74_RS17350 (AOY74_18305)	-	3595179..3596222 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
AOY74_RS17355 (AOY74_18310)	-	3596447..3596998 (+)	552	WP_001683231.1	flavodoxin family protein	-
AOY74_RS17360 (AOY74_18315)	rpoS	3597176..3598168 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AOY74_RS17365 (AOY74_18320)	nlpD	3598231..3599325 (-)	1095	WP_346657842.1	murein hydrolase activator NlpD	-
AOY74_RS17370 (AOY74_18325)	pcm	3599510..3600136 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AOY74_RS17375 (AOY74_18330)	surE	3600130..3600891 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AOY74_RS17380 (AOY74_18335)	truD	3600872..3601921 (-)	1050	WP_022296753.1	tRNA pseudouridine(13) synthase TruD	-
AOY74_RS17385 (AOY74_18340)	ispF	3601918..3602397 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AOY74_RS17390 (AOY74_18345)	ispD	3602397..3603107 (-)	711	WP_022296752.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=247048 AOY74_RS17360 WP_000081550.1 3597176..3598168(-) (rpoS) [Escherichia coli strain A21]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=247048 AOY74_RS17360 WP_000081550.1 3597176..3598168(-) (rpoS) [Escherichia coli strain A21]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715