Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CMV05_RS00860 Genome accession   NZ_CP023310
Coordinates   170464..171165 (-) Length   233 a.a.
NCBI ID   WP_096035900.1    Uniprot ID   -
Organism   Vibrio anguillarum strain VIB12 isolate Sea bass     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 165464..176165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMV05_RS00830 (CMV05_00830) gspL 165667..166878 (+) 1212 WP_096035897.1 type II secretion system protein GspL -
  CMV05_RS00835 (CMV05_00835) - 166889..167386 (+) 498 WP_096035898.1 type II secretion system protein M -
  CMV05_RS00840 (CMV05_00840) - 167383..168141 (+) 759 WP_096035899.1 type II secretion system protein N -
  CMV05_RS00845 (CMV05_00845) cysQ 168224..169051 (-) 828 WP_010319313.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  CMV05_RS00850 (CMV05_00850) nudE 169076..169621 (-) 546 WP_013855426.1 ADP compounds hydrolase NudE -
  CMV05_RS00855 (CMV05_00855) nfuA 169777..170364 (-) 588 WP_013855425.1 Fe-S biogenesis protein NfuA -
  CMV05_RS00860 (CMV05_00860) comF 170464..171165 (-) 702 WP_096035900.1 phosphoribosyltransferase family protein Machinery gene
  CMV05_RS00865 (CMV05_00865) bioH 171312..172076 (+) 765 WP_096035901.1 pimeloyl-ACP methyl ester esterase BioH -
  CMV05_RS00870 (CMV05_00870) - 172344..172814 (+) 471 WP_026027513.1 hypothetical protein -
  CMV05_RS00875 (CMV05_00875) - 172964..175294 (-) 2331 WP_096035902.1 Tex family protein -
  CMV05_RS00880 (CMV05_00880) greB 175638..176120 (+) 483 WP_010319306.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26687.10 Da        Isoelectric Point: 9.6283

>NTDB_id=245849 CMV05_RS00860 WP_096035900.1 170464..171165(-) (comF) [Vibrio anguillarum strain VIB12 isolate Sea bass]
MLSHWIQKTITRLVSRQCLLCRLPIETHQTGAWCKTCLTYFAPQPRCQQCGLPTLITVPQCGQCLANPPPWQRLYCVGDY
IFPLSHTIHQLKYEGQFWQSRHLSALLTPRIDTPAPLITSVPLHWQRRLKRGFNQSALLASQLSQQLGASCDNQLIKRNR
ATPQQQGLSKLQRKQNLKHAFTLRHRPTHKHIALVDDVVTTGSTVQQICQLLLEVGVERIDIYCICRTPEPKD

Nucleotide


Download         Length: 702 bp        

>NTDB_id=245849 CMV05_RS00860 WP_096035900.1 170464..171165(-) (comF) [Vibrio anguillarum strain VIB12 isolate Sea bass]
ATGTTATCGCATTGGATTCAAAAAACCATCACTCGCTTGGTAAGCCGTCAGTGTCTACTGTGTCGTTTACCGATTGAAAC
TCACCAAACTGGAGCTTGGTGTAAGACCTGCCTAACCTATTTTGCACCGCAACCTCGCTGCCAACAGTGCGGCCTGCCAA
CGCTTATTACCGTGCCTCAATGTGGGCAATGTTTAGCGAATCCTCCGCCTTGGCAACGCCTATACTGTGTCGGCGACTAT
ATTTTTCCGCTCAGTCACACCATTCATCAACTCAAATATGAAGGTCAATTTTGGCAATCTCGCCATTTGAGTGCCTTACT
GACGCCACGTATCGACACTCCCGCCCCGCTCATCACCAGCGTTCCGCTGCACTGGCAACGGCGCTTAAAACGCGGCTTCA
ATCAAAGTGCACTACTTGCCTCTCAATTAAGTCAACAACTGGGGGCTAGCTGCGATAACCAGTTGATCAAACGCAATCGC
GCAACGCCCCAGCAGCAAGGGCTTTCTAAATTACAGCGCAAACAAAATCTCAAACATGCATTCACACTACGGCACCGTCC
CACGCACAAGCACATTGCACTTGTTGACGATGTAGTGACCACGGGCAGCACCGTGCAGCAAATCTGTCAATTACTGCTTG
AAGTCGGTGTCGAAAGGATTGATATTTACTGCATATGCCGCACTCCTGAACCTAAAGATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(136-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

58.369

100

0.584
  comF Vibrio campbellii strain DS40M4

51.681

100

0.528

Multiple sequence alignment