Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   SYC_RS01705 Genome accession   NC_006576
Coordinates   377973..378350 (+) Length   125 a.a.
NCBI ID   WP_011242643.1    Uniprot ID   A0A0H3K5T5
Organism   Synechococcus elongatus PCC 6301     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 372973..383350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYC_RS01685 (syc0325_d) - 373878..374624 (+) 747 WP_011242639.1 phycocyanobilin:ferredoxin oxidoreductase -
  SYC_RS01690 (syc0326_d) - 374713..375813 (+) 1101 WP_011242640.1 HlyD family efflux transporter periplasmic adaptor subunit -
  SYC_RS01695 (syc0327_d) devC 375797..376975 (+) 1179 WP_011242641.1 ABC transporter permease DevC -
  SYC_RS01700 (syc0328_c) truB 376996..377880 (-) 885 WP_011242642.1 tRNA pseudouridine(55) synthase TruB -
  SYC_RS01705 (syc0329_d) pilH 377973..378350 (+) 378 WP_011242643.1 response regulator Machinery gene
  SYC_RS01710 (syc0330_c) rpmA 378472..378738 (-) 267 WP_011242644.1 50S ribosomal protein L27 -
  SYC_RS01715 (syc0331_c) rplU 378773..379156 (-) 384 WP_011242645.1 50S ribosomal protein L21 -
  SYC_RS01720 (syc0332_d) - 379394..380248 (+) 855 WP_011242646.1 circadian clock protein KaiA -
  SYC_RS01725 (syc0333_d) kaiB 380338..380646 (+) 309 WP_011242647.1 circadian clock protein KaiB -
  SYC_RS01730 (syc0334_d) kaiC 380696..382255 (+) 1560 WP_011242648.1 circadian clock protein KaiC -
  SYC_RS01735 (syc0335_c) - 382252..383259 (-) 1008 WP_011242649.1 acyl-CoA dehydrogenase family protein -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 13825.87 Da        Isoelectric Point: 4.6652

>NTDB_id=24478 SYC_RS01705 WP_011242643.1 377973..378350(+) (pilH) [Synechococcus elongatus PCC 6301]
MANILVVDDSSLYLELARQALVDHGHQVELANNGQEALQSVANKKPVLILLDIVMPEMNGYDVLRSLKKSAENATIPVIL
CSTKGEDFDKYWGLKQGANAYLTKPYEPTELLLLVQEQLTAARNS

Nucleotide


Download         Length: 378 bp        

>NTDB_id=24478 SYC_RS01705 WP_011242643.1 377973..378350(+) (pilH) [Synechococcus elongatus PCC 6301]
ATGGCCAATATCCTCGTTGTTGATGACAGCAGTCTCTACCTAGAACTTGCCCGTCAAGCCTTAGTTGATCATGGCCACCA
GGTTGAACTTGCCAACAACGGTCAAGAAGCCTTGCAATCCGTCGCCAACAAGAAGCCTGTCTTGATTCTGCTCGATATCG
TTATGCCAGAAATGAATGGCTACGACGTACTGCGATCGCTCAAGAAATCAGCTGAAAACGCTACGATTCCTGTCATTCTT
TGCTCGACCAAAGGCGAGGATTTTGACAAGTATTGGGGGCTCAAACAGGGAGCCAATGCCTACTTGACTAAGCCCTATGA
ACCAACCGAACTATTGCTATTGGTGCAGGAACAACTGACTGCAGCCCGCAATTCTTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3K5T5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

47.899

95.2

0.456