Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   STR_RS02360 Genome accession   NC_006449
Coordinates   427663..428622 (+) Length   319 a.a.
NCBI ID   WP_011680817.1    Uniprot ID   -
Organism   Streptococcus thermophilus CNRZ1066     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 422663..433622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STR_RS02340 (str0451) metG 423188..425191 (+) 2004 WP_011226921.1 methionine--tRNA ligase -
  STR_RS02345 (str0452) - 425469..426365 (-) 897 WP_002948119.1 LysR family transcriptional regulator -
  STR_RS02360 (str0453) coiA 427663..428622 (+) 960 WP_011680817.1 competence protein CoiA Machinery gene
  STR_RS02365 (str0454) pepF 428633..430438 (+) 1806 WP_011226924.1 oligoendopeptidase F Regulator
  STR_RS02370 (str0455) - 430622..431329 (+) 708 WP_002946027.1 O-methyltransferase -
  STR_RS02375 (str0456) - 431391..432506 (+) 1116 WP_011225573.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 38070.95 Da        Isoelectric Point: 9.1721

>NTDB_id=24343 STR_RS02360 WP_011680817.1 427663..428622(+) (coiA) [Streptococcus thermophilus CNRZ1066]
MLIAKNQKGLLVSALENGLNREETYRCPGCQGIVLLRQGKVICPHFAHKSLQDCQFFSENESAQHLSLKATVYQSLDNHG
ERVCIEKVLPELGQIADLFVGDSLALEVQCSRLSQKRLRERTLAYHQIGYEVRWLLGQELWLGQRLTDLQRDFLYFTTKI
GFHLWELDWEREEIRLKYLIYEDIFGRVYYLTKTWSLIENLMTILRFPYQARKVETYQVTQRKKVSHVIQRELMGKNPRW
MRRQEEAYLKGMNLLSLSDQDFFPQVRFPESKHGFVQIRLSIDGFEKLFMQYYRKRDFSYKQTLCPPNFYAKIVDYRHN

Nucleotide


Download         Length: 960 bp        

>NTDB_id=24343 STR_RS02360 WP_011680817.1 427663..428622(+) (coiA) [Streptococcus thermophilus CNRZ1066]
ATGTTAATTGCTAAAAATCAGAAAGGGCTCTTAGTTTCGGCTCTTGAAAATGGGTTGAATCGTGAGGAAACTTATAGGTG
CCCTGGCTGTCAAGGAATTGTATTGTTGAGACAGGGAAAGGTGATATGCCCGCATTTTGCCCATAAATCTTTGCAGGATT
GTCAGTTTTTCTCAGAAAATGAATCGGCCCAACATTTATCCCTAAAAGCCACTGTGTATCAATCCCTGGACAATCATGGT
GAAAGAGTTTGTATTGAAAAGGTTCTGCCTGAGTTAGGTCAGATTGCGGATTTATTCGTTGGAGATTCCTTAGCCTTGGA
AGTCCAGTGTTCTCGTTTATCACAGAAACGTTTAAGAGAGCGGACTTTAGCTTACCATCAAATAGGTTACGAGGTACGAT
GGCTTTTGGGGCAAGAACTGTGGTTGGGACAGCGTTTAACAGATCTACAGCGTGATTTTCTTTATTTTACAACTAAGATA
GGTTTCCACCTTTGGGAACTTGATTGGGAGAGGGAAGAGATTAGACTTAAGTATCTCATCTATGAGGATATTTTTGGGAG
AGTTTATTACTTAACTAAGACCTGGTCTTTAATAGAAAATCTCATGACCATATTACGTTTTCCTTATCAGGCCAGAAAGG
TGGAGACTTATCAAGTGACTCAGCGAAAGAAAGTCTCACATGTTATTCAACGGGAATTAATGGGGAAAAATCCAAGATGG
ATGAGAAGACAGGAGGAGGCTTATCTTAAGGGGATGAATTTGTTAAGTTTGTCCGATCAGGATTTTTTTCCACAAGTGCG
GTTTCCTGAGTCTAAGCATGGATTTGTCCAAATTAGATTATCTATTGATGGTTTTGAAAAGCTTTTCATGCAGTATTATC
GAAAAAGGGATTTTTCTTACAAGCAAACCCTGTGCCCTCCCAACTTTTATGCTAAAATAGTAGATTATAGACACAATTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

45.338

97.492

0.442
  coiA Streptococcus mitis NCTC 12261

45.338

97.492

0.442
  coiA Streptococcus pneumoniae Rx1

45.016

97.492

0.439
  coiA Streptococcus pneumoniae D39

45.016

97.492

0.439
  coiA Streptococcus pneumoniae R6

45.016

97.492

0.439

Multiple sequence alignment