Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   CGP89_RS02890 Genome accession   NZ_CP022893
Coordinates   578514..579083 (+) Length   189 a.a.
NCBI ID   WP_000872882.1    Uniprot ID   A0A7U7EXA1
Organism   Staphylococcus aureus strain 61     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 573514..584083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGP89_RS02865 (CGP89_00506) cysE 574727..575374 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  CGP89_RS02870 (CGP89_00507) cysS 575358..576758 (+) 1401 WP_000631969.1 cysteine--tRNA ligase -
  CGP89_RS02875 (CGP89_00508) - 576751..577155 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  CGP89_RS02880 (CGP89_00509) rlmB 577163..577909 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CGP89_RS02885 (CGP89_00510) - 577909..578433 (+) 525 WP_000664737.1 NYN domain-containing protein -
  CGP89_RS02890 (CGP89_00511) sigH 578514..579083 (+) 570 WP_000872882.1 RNA polymerase sigma factor Regulator
  CGP89_RS02895 rpmG 579198..579341 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  CGP89_RS02900 (CGP89_00512) secE 579397..579579 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  CGP89_RS02905 (CGP89_00513) nusG 579592..580140 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  CGP89_RS02910 (CGP89_00514) rplK 580321..580743 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  CGP89_RS02915 (CGP89_00515) rplA 580951..581643 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  CGP89_RS02925 (CGP89_00516) rplJ 581915..582415 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  CGP89_RS02930 (CGP89_00517) rplL 582458..582826 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23044.91 Da        Isoelectric Point: 9.4170

>NTDB_id=242724 CGP89_RS02890 WP_000872882.1 578514..579083(+) (sigH) [Staphylococcus aureus strain 61]
MKYDLTTQDSTIKRNNSINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=242724 CGP89_RS02890 WP_000872882.1 578514..579083(+) (sigH) [Staphylococcus aureus strain 61]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATTCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7EXA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

100

100

1
  sigH Staphylococcus aureus MW2

97.884

100

0.979

Multiple sequence alignment