Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   CHF41_RS01050 Genome accession   NZ_CP022680
Coordinates   222439..223152 (+) Length   237 a.a.
NCBI ID   WP_119875621.1    Uniprot ID   -
Organism   Streptococcus respiraculi strain HTS25     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 217439..228152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHF41_RS01040 treC 218425..220059 (-) 1635 WP_119875619.1 alpha,alpha-phosphotrehalase -
  CHF41_RS01045 treP 220261..222249 (-) 1989 WP_119875620.1 PTS system trehalose-specific EIIBC component -
  CHF41_RS01050 treR 222439..223152 (+) 714 WP_119875621.1 trehalose operon repressor Regulator
  CHF41_RS01055 zapA 223220..223531 (+) 312 WP_119875622.1 cell division protein ZapA -
  CHF41_RS01060 - 223528..224073 (+) 546 WP_119875623.1 CvpA family protein -
  CHF41_RS01065 - 224671..227004 (+) 2334 WP_119875624.1 endonuclease MutS2 -
  CHF41_RS01070 - 227064..227435 (+) 372 WP_338058445.1 VOC family protein -
  CHF41_RS01075 trxA 227694..228008 (+) 315 WP_119875626.1 thioredoxin -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27589.52 Da        Isoelectric Point: 5.7236

>NTDB_id=241543 CHF41_RS01050 WP_119875621.1 222439..223152(+) (treR) [Streptococcus respiraculi strain HTS25]
MKKYQEIFNDIKEKIEDNIYPAEHVLPTEKELQLQYQVSRDTIRKALSMLTERGLIQKVQGKGSLVLKQELLDFPVSGLT
SYQELTQSLHMDSHTEVVSLELLTVTSNLSQLTGFEPYSQVWKLVRTRSIDGKVSVLDTDYLSYEVVPHLTKEIAEISIY
AYLEGELGLDIAYAQKEITVEPTNREERELMKSKDDYLVQIRSRVFLGNTQQFQYTESKHKIDKFRFVDFARRKTIL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=241543 CHF41_RS01050 WP_119875621.1 222439..223152(+) (treR) [Streptococcus respiraculi strain HTS25]
ATGAAAAAATATCAAGAAATTTTCAATGATATCAAGGAAAAAATTGAGGATAATATCTACCCAGCAGAGCATGTTCTGCC
AACGGAAAAAGAGTTGCAATTACAGTATCAAGTCAGCCGAGACACGATTCGCAAGGCTTTATCCATGCTGACCGAGCGGG
GCTTGATTCAAAAAGTGCAGGGCAAGGGCTCACTCGTCTTAAAGCAAGAGTTACTTGATTTTCCTGTATCGGGCTTAACT
TCCTATCAAGAGTTGACCCAGTCCCTTCACATGGATAGTCATACGGAGGTGGTGAGCTTGGAATTGTTGACGGTGACAAG
TAATCTATCTCAGCTAACAGGGTTTGAACCCTACAGTCAGGTTTGGAAACTTGTCCGTACAAGGTCTATTGACGGAAAGG
TATCGGTTCTTGATACGGATTATCTATCCTATGAGGTGGTGCCGCATTTGACTAAGGAGATTGCCGAGATTTCAATCTAC
GCTTATTTAGAGGGTGAGCTGGGCTTGGATATCGCCTATGCGCAAAAGGAAATCACAGTTGAGCCGACCAATCGGGAGGA
GCGAGAATTGATGAAGAGCAAGGATGATTATCTCGTTCAGATTCGCTCCCGTGTCTTTTTGGGCAATACTCAGCAATTTC
AGTATACAGAAAGTAAGCATAAGATTGATAAGTTTCGCTTTGTCGATTTTGCACGGAGAAAGACTATTCTTTAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(90-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

51.282

98.734

0.506

Multiple sequence alignment