Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BaGK_RS00245 Genome accession   NZ_CP022653
Coordinates   45031..45321 (-) Length   96 a.a.
NCBI ID   WP_088116342.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain GQJK17     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40031..50321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaGK_RS00205 (BaGK_00205) darA 40049..40378 (+) 330 WP_003328606.1 cyclic di-AMP receptor DarA -
  BaGK_RS00210 (BaGK_00210) - 40391..40831 (+) 441 WP_003328605.1 YaaR family protein -
  BaGK_RS00215 (BaGK_00215) holB 40843..41832 (+) 990 WP_010787388.1 DNA polymerase III subunit delta' -
  BaGK_RS00220 (BaGK_00220) ricT 41835..42662 (+) 828 WP_003328602.1 competence/sporulation regulator complex protein RicT -
  BaGK_RS00225 (BaGK_00225) yabA 42677..43036 (+) 360 WP_003328601.1 replication initiation-control protein YabA -
  BaGK_RS00230 (BaGK_00230) - 43097..43840 (+) 744 WP_003328600.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  BaGK_RS00235 (BaGK_00235) - 43827..44126 (+) 300 WP_003328599.1 GIY-YIG nuclease family protein -
  BaGK_RS00240 (BaGK_00240) rsmI 44101..44976 (+) 876 WP_094231219.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BaGK_RS00245 (BaGK_00245) abrB 45031..45321 (-) 291 WP_088116342.1 transition state genes transcriptional regulator AbrB Regulator
  BaGK_RS00250 (BaGK_00250) metG 45808..47802 (+) 1995 WP_094231220.1 methionine--tRNA ligase -
  BaGK_RS00255 (BaGK_00255) - 47881..48648 (+) 768 WP_088116343.1 TatD family hydrolase -
  BaGK_RS00260 (BaGK_00260) - 48806..50131 (+) 1326 WP_094231221.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10858.67 Da        Isoelectric Point: 6.3482

>NTDB_id=241201 BaGK_RS00245 WP_088116342.1 45031..45321(-) (abrB) [Bacillus atrophaeus strain GQJK17]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSQEG
AEQIIKEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=241201 BaGK_RS00245 WP_088116342.1 45031..45321(-) (abrB) [Bacillus atrophaeus strain GQJK17]
ATGTTTATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTAGGACGTGTAGTTATTCCTATCGAACTGCGCCGTAC
ACTTGGAATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAGCCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGACGATAACCTTAAACTTGCAAACGGTAAATTGGTTCTTAGCCAAGAAGGC
GCTGAGCAAATCATTAAAGAAATCCAAAACCAGCTTCAAAGCCAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

94.792

100

0.948

Multiple sequence alignment