Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   OTERR_RS15685 Genome accession   NZ_CP022579
Coordinates   3469845..3471341 (+) Length   498 a.a.
NCBI ID   WP_149426345.1    Uniprot ID   -
Organism   Oryzomicrobium terrae strain TPP412     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3464845..3476341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTERR_RS15660 (OTERR_30630) - 3464898..3465152 (-) 255 WP_054619928.1 hypothetical protein -
  OTERR_RS15665 (OTERR_30640) - 3465319..3467334 (-) 2016 WP_149426341.1 UvrD-helicase domain-containing protein -
  OTERR_RS15670 (OTERR_30650) recA 3467489..3468514 (+) 1026 WP_149426342.1 recombinase RecA Machinery gene
  OTERR_RS15675 (OTERR_30660) recX 3468545..3468982 (+) 438 WP_246154220.1 recombination regulator RecX -
  OTERR_RS15680 (OTERR_30670) lptB 3468989..3469765 (+) 777 WP_149426344.1 LPS export ABC transporter ATP-binding protein -
  OTERR_RS15685 (OTERR_30680) rpoN/rpoN1 3469845..3471341 (+) 1497 WP_149426345.1 RNA polymerase factor sigma-54 Machinery gene
  OTERR_RS15690 (OTERR_30690) raiA 3471354..3471674 (+) 321 WP_054619923.1 ribosome-associated translation inhibitor RaiA -
  OTERR_RS15695 (OTERR_30700) ptsN 3471930..3472415 (+) 486 WP_054619922.1 PTS IIA-like nitrogen regulatory protein PtsN -
  OTERR_RS15700 (OTERR_30710) hprK 3472384..3473319 (+) 936 WP_054619921.1 HPr(Ser) kinase/phosphatase -
  OTERR_RS15705 (OTERR_30720) - 3473358..3473675 (+) 318 WP_054619920.1 PsiF family protein -
  OTERR_RS15710 (OTERR_30730) - 3473756..3474673 (-) 918 WP_054619919.1 FHA domain-containing protein -
  OTERR_RS15715 (OTERR_30740) ttcA 3474834..3475772 (-) 939 WP_054619990.1 tRNA 2-thiocytidine(32) synthetase TtcA -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55179.12 Da        Isoelectric Point: 4.6370

>NTDB_id=240959 OTERR_RS15685 WP_149426345.1 3469845..3471341(+) (rpoN/rpoN1) [Oryzomicrobium terrae strain TPP412]
MKPSLQLKLSQHLALTPQLQQSIKLLQLSTLELNQEIEHYLLENPLLEREDDYEPSPPPTDAGFADAPGGALPNDRDEAD
ARGEREEAADPGDSNEFSAENNAEGSLDDGWFAEGSYPSGSRDNDGDDEGDGQDIQAATTSLKEHLTWQLGLIPLSDRDR
SLACFLVEALDDDGYLDQSLEELGEALPAELEVEPEELEIALKHIHNLEPTGVGARSPQECLALQLKARPAEPLRNLALT
LVEKYLDLLASRDFTRLKRQLGCDDDTLKAVQTLIMGLNPRPGAQYAPLETRYIVPDVIVRKVRNQWVASINPDAFPRLR
VNRLYADLLQKHRTRGDGGGMSGQLQEARWLIKNVQQRFDTILRVSQAIVDRQRAFFDHGEVAMRPLVLREIAEILDLHE
STVSRVTTQKYMASPRGIFELKYFFGSHVATDTGGACSATAIRALIKQLVGSENAKKPLSDNQIADILGQQGIVVARRTI
AKYREGMGIPAANLRKSL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=240959 OTERR_RS15685 WP_149426345.1 3469845..3471341(+) (rpoN/rpoN1) [Oryzomicrobium terrae strain TPP412]
ATGAAACCCAGCCTCCAGCTCAAGCTCTCGCAACACCTGGCGCTCACGCCCCAGTTGCAGCAGTCGATCAAGCTGCTGCA
ACTGTCGACCCTCGAGCTGAACCAGGAGATCGAGCATTACCTGCTGGAAAATCCGCTACTGGAACGGGAGGACGATTACG
AGCCCAGCCCCCCCCCGACCGATGCCGGCTTCGCCGACGCCCCGGGTGGCGCCCTGCCGAACGACCGGGACGAAGCGGAC
GCCCGTGGCGAGCGTGAGGAGGCGGCGGACCCTGGCGATAGCAACGAATTCAGCGCCGAGAACAACGCCGAAGGTAGCCT
CGACGACGGCTGGTTCGCCGAAGGCAGCTACCCGAGCGGCAGTCGCGACAACGATGGCGACGACGAGGGAGATGGCCAGG
ACATCCAGGCCGCCACTACCAGTCTGAAGGAACACCTGACCTGGCAGTTGGGGCTGATCCCCCTGTCCGACCGGGACCGC
AGCCTGGCCTGTTTCCTGGTCGAGGCCCTCGACGACGACGGCTACCTCGACCAGTCCCTGGAAGAACTGGGGGAAGCACT
GCCCGCCGAACTGGAGGTCGAGCCGGAAGAGCTGGAGATCGCCCTCAAGCACATCCACAACCTGGAGCCGACCGGGGTGG
GGGCCCGCAGCCCTCAGGAATGCCTGGCATTGCAACTCAAGGCGCGTCCCGCCGAACCGCTGCGCAACCTGGCCCTGACC
CTGGTGGAAAAATACTTGGACCTGCTGGCCAGCCGCGACTTCACCCGGCTGAAGCGCCAACTGGGCTGCGACGACGATAC
CCTGAAGGCGGTGCAAACCCTGATCATGGGCCTCAACCCCCGCCCCGGGGCCCAGTACGCGCCCCTGGAAACCCGCTACA
TCGTGCCCGATGTCATCGTGCGCAAGGTGCGCAACCAGTGGGTGGCGAGCATCAACCCGGACGCCTTCCCGCGCCTGCGG
GTCAACCGCCTCTACGCCGACCTGCTGCAGAAGCACCGCACCCGCGGCGACGGTGGCGGCATGTCCGGCCAGTTGCAGGA
AGCGCGCTGGCTGATCAAAAACGTGCAGCAGCGCTTCGACACCATCCTGCGCGTCTCCCAGGCCATCGTGGACCGGCAGC
GCGCCTTCTTCGACCACGGCGAGGTGGCGATGCGCCCCCTGGTGCTGCGCGAGATCGCCGAGATCCTCGATCTGCACGAA
TCCACCGTCTCCCGGGTGACCACCCAGAAGTACATGGCCTCGCCCCGGGGCATCTTCGAACTGAAATATTTTTTCGGTAG
CCACGTGGCCACCGATACCGGTGGCGCTTGCTCGGCCACCGCCATCCGCGCCCTCATCAAGCAATTGGTGGGGTCGGAAA
ACGCCAAGAAACCCCTCTCGGATAATCAAATTGCCGATATTCTCGGACAGCAGGGCATTGTCGTAGCCCGCCGGACGATA
GCAAAATACAGAGAGGGGATGGGCATTCCAGCGGCCAATCTCCGTAAGTCCCTCTAA

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(343-496)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(134-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

55.138

100

0.56

Multiple sequence alignment