Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OTERR_RS15670 Genome accession   NZ_CP022579
Coordinates   3467489..3468514 (+) Length   341 a.a.
NCBI ID   WP_149426342.1    Uniprot ID   A0A5C1EC44
Organism   Oryzomicrobium terrae strain TPP412     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3462489..3473514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTERR_RS15635 (OTERR_30590) - 3463033..3463269 (-) 237 WP_149426339.1 hypothetical protein -
  OTERR_RS15640 (OTERR_30600) - 3463391..3463645 (+) 255 WP_149426340.1 helix-turn-helix transcriptional regulator -
  OTERR_RS15650 (OTERR_30610) - 3463977..3464414 (+) 438 WP_054619930.1 c-type cytochrome -
  OTERR_RS15655 (OTERR_30620) - 3464495..3464770 (-) 276 WP_054619929.1 hypothetical protein -
  OTERR_RS15660 (OTERR_30630) - 3464898..3465152 (-) 255 WP_054619928.1 hypothetical protein -
  OTERR_RS15665 (OTERR_30640) - 3465319..3467334 (-) 2016 WP_149426341.1 UvrD-helicase domain-containing protein -
  OTERR_RS15670 (OTERR_30650) recA 3467489..3468514 (+) 1026 WP_149426342.1 recombinase RecA Machinery gene
  OTERR_RS15675 (OTERR_30660) recX 3468545..3468982 (+) 438 WP_246154220.1 recombination regulator RecX -
  OTERR_RS15680 (OTERR_30670) lptB 3468989..3469765 (+) 777 WP_149426344.1 LPS export ABC transporter ATP-binding protein -
  OTERR_RS15685 (OTERR_30680) rpoN/rpoN1 3469845..3471341 (+) 1497 WP_149426345.1 RNA polymerase factor sigma-54 Machinery gene
  OTERR_RS15690 (OTERR_30690) raiA 3471354..3471674 (+) 321 WP_054619923.1 ribosome-associated translation inhibitor RaiA -
  OTERR_RS15695 (OTERR_30700) ptsN 3471930..3472415 (+) 486 WP_054619922.1 PTS IIA-like nitrogen regulatory protein PtsN -
  OTERR_RS15700 (OTERR_30710) hprK 3472384..3473319 (+) 936 WP_054619921.1 HPr(Ser) kinase/phosphatase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36280.91 Da        Isoelectric Point: 6.1683

>NTDB_id=240958 OTERR_RS15670 WP_149426342.1 3467489..3468514(+) (recA) [Oryzomicrobium terrae strain TPP412]
MDENKAKALTAALAQIEKQFGKGSIMKMGETEVDQGLQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVV
AEMQKMGGVAAFIDAEHALDPQYAQKLGVKIGDLLISQPDTGEQALEIADMLVRSGGVDVIIIDSVAALVPKAEIEGEMG
DSLPGLHARLMSQALRKLTANIKKTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGGIKKGDEVIGN
ETKVKVVKNKVSPPFREAIFDILYGEGISREGEIIDMGVAHKIVEKSGAWYAYNGEKIGQGKDNVREYLRQHPEMAAEIE
AKVRAAVGVASPTGVAAPAEA

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=240958 OTERR_RS15670 WP_149426342.1 3467489..3468514(+) (recA) [Oryzomicrobium terrae strain TPP412]
ATGGACGAAAACAAAGCCAAAGCCCTGACGGCCGCCCTGGCCCAGATCGAAAAGCAATTCGGCAAAGGCTCCATCATGAA
GATGGGCGAAACCGAGGTGGATCAAGGCCTCCAGGTGGTTTCCACCGGCTCCCTCGGCCTCGACATCGCCCTGGGCGTCG
GCGGCCTGCCGCGCGGTCGCGTGGTCGAGATCTACGGCCCGGAATCCTCCGGCAAGACCACCCTGACCCTGCAGGTCGTG
GCCGAAATGCAAAAGATGGGAGGCGTGGCCGCCTTCATCGACGCCGAGCACGCCCTGGACCCTCAGTACGCGCAAAAGCT
CGGGGTCAAGATCGGCGACCTGCTGATTTCCCAACCCGACACCGGTGAGCAGGCCCTGGAGATCGCCGACATGCTGGTGC
GCTCCGGCGGCGTAGACGTGATCATCATCGACTCGGTGGCCGCCCTGGTGCCCAAGGCCGAAATCGAAGGCGAGATGGGC
GATTCCCTGCCCGGCCTGCACGCCCGCCTAATGAGCCAGGCCCTGCGCAAGCTCACCGCCAACATCAAGAAGACCAACAC
CCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTTGGCTCCCCGGAAACCACCACCGGCGGCAACG
CGCTCAAGTTCTACGCCTCGGTGCGCCTCGATATCCGCCGCATCGGCGGCATCAAGAAGGGCGATGAGGTAATCGGCAAC
GAGACCAAGGTCAAAGTGGTGAAGAACAAGGTCTCGCCCCCGTTCCGCGAAGCCATCTTCGACATCCTCTACGGCGAAGG
CATTTCCCGGGAAGGCGAGATCATCGACATGGGCGTGGCCCACAAGATCGTCGAGAAGTCCGGCGCCTGGTATGCCTACA
ACGGCGAGAAGATCGGCCAGGGCAAGGACAACGTGCGCGAGTACCTGCGTCAGCACCCGGAAATGGCCGCCGAGATCGAA
GCCAAGGTGCGCGCTGCCGTCGGCGTGGCCTCGCCCACCGGCGTCGCGGCGCCGGCCGAAGCGTAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.077

95.308

0.792
  recA Pseudomonas stutzeri DSM 10701

73.077

99.12

0.724
  recA Neisseria gonorrhoeae MS11

75.076

96.481

0.724
  recA Neisseria gonorrhoeae MS11

75.076

96.481

0.724
  recA Neisseria gonorrhoeae strain FA1090

75.076

96.481

0.724
  recA Acinetobacter baylyi ADP1

70.294

99.707

0.701
  recA Glaesserella parasuis strain SC1401

70.27

97.654

0.686
  recA Acinetobacter baumannii D1279779

71.605

95.015

0.68
  recA Vibrio cholerae strain A1552

70.37

95.015

0.669
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.37

95.015

0.669
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.549

96.188

0.631
  recA Latilactobacillus sakei subsp. sakei 23K

64.438

96.481

0.622
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.333

96.774

0.613
  recA Bacillus subtilis subsp. subtilis str. 168

64.11

95.601

0.613
  recA Lactococcus lactis subsp. cremoris KW2

62.275

97.947

0.61
  recA Streptococcus mutans UA159

61.747

97.361

0.601
  recA Helicobacter pylori strain NCTC11637

62.31

96.481

0.601
  recA Helicobacter pylori 26695

62.31

96.481

0.601
  recA Streptococcus pneumoniae D39

62.006

96.481

0.598
  recA Streptococcus pneumoniae R6

62.006

96.481

0.598
  recA Streptococcus pneumoniae TIGR4

62.006

96.481

0.598
  recA Streptococcus pneumoniae Rx1

62.006

96.481

0.598
  recA Streptococcus mitis SK321

61.702

96.481

0.595
  recA Streptococcus pyogenes NZ131

61.212

96.774

0.592
  recA Streptococcus mitis NCTC 12261

61.398

96.481

0.592
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.55

95.894

0.581

Multiple sequence alignment