Detailed information NTG0240255

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CGU46_RS15330
• Genome accession: NZ_CP022525
• Coordinates: 3203435..3204307 (-)
• Length: 290 a.a.
• NCBI ID: WP_021264129.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain Ocean-1175
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3198435..3209307

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CGU46_RS15285 (CGU46_15285)	-	3199296..3199466 (-)	171	WP_003094672.1	DUF3094 family protein	-
CGU46_RS15290 (CGU46_15290)	-	3199492..3199941 (-)	450	WP_021264127.1	MOSC domain-containing protein	-
CGU46_RS15295 (CGU46_15295)	-	3199938..3200567 (-)	630	WP_003094668.1	DUF1780 domain-containing protein	-
CGU46_RS15300 (CGU46_15300)	-	3200700..3201125 (+)	426	WP_021264128.1	GNAT family N-acetyltransferase	-
CGU46_RS15305 (CGU46_15305)	-	3201122..3201592 (+)	471	WP_003094664.1	hypothetical protein	-
CGU46_RS15310 (CGU46_15310)	-	3201589..3202278 (+)	690	WP_003094662.1	energy-coupling factor ABC transporter permease	-
CGU46_RS15315 (CGU46_15315)	-	3202384..3202593 (+)	210	WP_003094660.1	hypothetical protein	-
CGU46_RS15320 (CGU46_15320)	yacG	3202630..3202830 (-)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
CGU46_RS15325 (CGU46_15325)	coaE	3202827..3203438 (-)	612	WP_003094654.1	dephospho-CoA kinase	-
CGU46_RS15330 (CGU46_15330)	pilD	3203435..3204307 (-)	873	WP_021264129.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
CGU46_RS15335 (CGU46_15335)	pilC	3204311..3205531 (-)	1221	WP_023101565.1	type 4a pilus biogenesis protein PilC	Machinery gene
CGU46_RS15340 (CGU46_15340)	pilB	3205535..3207235 (-)	1701	WP_021264132.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CGU46_RS15345 (CGU46_15345)	pilA	3207467..3207916 (+)	450	WP_021264133.1	pilin	Machinery gene

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31823.84 Da
• Isoelectric Point: 7.3860

>NTDB_id=240255 CGU46_RS15330 WP_021264129.1 3203435..3204307(-) (pilD) [Pseudomonas aeruginosa strain Ocean-1175]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPSSACPHCGHEIR
PWENIPLVSYLALGGKCSSCKATIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=240255 CGU46_RS15330 WP_021264129.1 3203435..3204307(-) (pilD) [Pseudomonas aeruginosa strain Ocean-1175]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCAGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAGTTCGGCGTGCCCGCACTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCACCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.071	96.552	0.541
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472