Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   C7M27_RS16790 Genome accession   NZ_CP028213
Coordinates   3222010..3222444 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain SRCM102749     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3217010..3227444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M27_RS16775 (C7M27_03315) epsK 3217640..3218491 (-) 852 WP_021481723.1 cyclic-di-GMP receptor EpsK -
  C7M27_RS16780 (C7M27_03316) ephJ 3218472..3219560 (-) 1089 WP_128740031.1 lipoprotein YdaJ -
  C7M27_RS16785 (C7M27_03317) topB 3219762..3221945 (-) 2184 WP_128740030.1 DNA topoisomerase III -
  C7M27_RS16790 (C7M27_03318) lrpC 3222010..3222444 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  C7M27_RS16795 (C7M27_03319) ydzA 3222629..3222919 (+) 291 WP_014475846.1 DUF3817 domain-containing protein -
  C7M27_RS16800 (C7M27_03320) amj 3222964..3223773 (-) 810 WP_015715258.1 lipid II flippase Amj -
  C7M27_RS16805 (C7M27_03321) ydaG 3224281..3224703 (-) 423 WP_014475844.1 pyridoxamine 5'-phosphate oxidase family protein -
  C7M27_RS16810 (C7M27_03322) ydaF 3224781..3225332 (-) 552 WP_003234398.1 GNAT family protein -
  C7M27_RS16815 (C7M27_03323) lyxE 3225418..3225921 (-) 504 WP_072173992.1 D-lyxose ketol-isomerase -
  C7M27_RS16820 (C7M27_03324) ydaD 3225937..3226797 (-) 861 WP_003234401.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=240101 C7M27_RS16790 WP_003246585.1 3222010..3222444(-) (lrpC) [Bacillus subtilis strain SRCM102749]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=240101 C7M27_RS16790 WP_003246585.1 3222010..3222444(-) (lrpC) [Bacillus subtilis strain SRCM102749]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGGCAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTAGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1