Detailed information NTG0023987

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: STR_RS08655
• Genome accession: NC_006449
• Coordinates: 1646629..1647021 (-)
• Length: 130 a.a.
• NCBI ID: WP_011227579.1
• Uniprot ID: A0A2S4DWC9
• Organism: Streptococcus thermophilus CNRZ1066
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1641629..1652021

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STR_RS08625 (str1839)	dapD	1641932..1642630 (-)	699	WP_002951996.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	-
STR_RS11710	-	1642716..1643470 (-)	755	Protein_1632	HAD family hydrolase	-
STR_RS08635 (str1842)	-	1643585..1644418 (-)	834	WP_011227577.1	putative RNA methyltransferase	-
STR_RS08640 (str1843)	-	1644787..1644954 (+)	168	WP_002945733.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
STR_RS11715	-	1645007..1645243 (+)	237	WP_041827105.1	hypothetical protein	-
STR_RS08650 (str1844)	tadA	1645351..1645869 (-)	519	WP_011227578.1	tRNA adenosine(34) deaminase TadA	-
STR_RS08655 (str1845)	ssbA	1646629..1647021 (-)	393	WP_011227579.1	single-stranded DNA-binding protein	Machinery gene
STR_RS08660 (str1846)	-	1647226..1647453 (-)	228	WP_003095911.1	sulfurtransferase TusA family protein	-
STR_RS08665 (str1847)	-	1647468..1648499 (-)	1032	WP_011227580.1	YeeE/YedE family protein	-
STR_RS08670 (str1848)	ytpR	1648637..1649260 (-)	624	WP_011227581.1	YtpR family tRNA-binding protein	-
STR_RS08675 (str1849)	-	1649270..1649584 (-)	315	WP_011226613.1	thioredoxin family protein	-
STR_RS08680 (str1850)	-	1649581..1649865 (-)	285	WP_041827106.1	DUF4651 domain-containing protein	-
STR_RS08685 (str1851)	pepA	1649965..1651032 (+)	1068	WP_002952022.1	glutamyl aminopeptidase	-
STR_RS08690 (str1852)	proC	1651048..1651818 (+)	771	WP_011226616.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

• Length: 130 a.a.
• Molecular weight: 14773.70 Da
• Isoelectric Point: 5.9275

>NTDB_id=23987 STR_RS08655 WP_011227579.1 1646629..1647021(-) (ssbA) [Streptococcus thermophilus CNRZ1066]
MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGELRTR
KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLILEEELPF

Nucleotide

• Length: 393 bp

>NTDB_id=23987 STR_RS08655 WP_011227579.1 1646629..1647021(-) (ssbA) [Streptococcus thermophilus CNRZ1066]
ATGTATAACAAAGTAATTTTAATTGGACGTTTAACAGCTACTCCTGAAATGGTTAAGACTGCTAGCGATAGGTCTTTTAC
ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGACTTTATTACAGTGGTTGTCT
GGGGGCGTTTGGCTGAGACCTTAGCCTCTTATGCTAGCAAGGGGAGTTTAATTTCTCTTGATGGTGAGCTTCGTACCCGT
AAGTACGATAAGGATGGCCAAACTCATTACGTTACTGAAGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGACAATGACTTGGCTGACCTGATTTTAGAAGAAGAGCTTCCCTTTTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-102)

3D structure

• AlphaFold DB: A0A2S4DWC9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	80.153	100	0.808
ssbB/cilA	Streptococcus pneumoniae TIGR4	75.573	100	0.762
ssbB	Streptococcus sobrinus strain NIDR 6715-7	75.573	100	0.762
ssbB/cilA	Streptococcus mitis SK321	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae R6	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae Rx1	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae D39	74.809	100	0.754
ssbB/cilA	Streptococcus mitis NCTC 12261	73.282	100	0.738
ssbB	Lactococcus lactis subsp. cremoris KW2	61.607	86.154	0.531
ssbA	Bacillus subtilis subsp. subtilis str. 168	48.113	81.538	0.392
ssb	Latilactobacillus sakei subsp. sakei 23K	47.17	81.538	0.385