Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   C7M26_RS02180 Genome accession   NZ_CP028212
Coordinates   364638..366128 (+) Length   496 a.a.
NCBI ID   WP_003230528.1    Uniprot ID   P50729
Organism   Bacillus subtilis strain SRCM102748     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 359638..371128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M26_RS02160 (C7M26_00423) serA 360387..361964 (-) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -
  C7M26_RS02165 (C7M26_00424) fmnP 362461..363033 (+) 573 WP_004399159.1 riboflavin transporter FmnP -
  C7M26_RS02170 (C7M26_00425) fdxA 363073..363321 (-) 249 WP_003225461.1 ferredoxin -
  C7M26_RS02175 (C7M26_00426) gmmB 363587..364645 (+) 1059 WP_004398594.1 helix-turn-helix domain-containing protein -
  C7M26_RS02180 (C7M26_00427) recS 364638..366128 (+) 1491 WP_003230528.1 ATP-dependent DNA helicase RecQ Machinery gene
  C7M26_RS02185 (C7M26_00428) ypbD 366155..366757 (+) 603 WP_003230529.1 CPBP family intramembrane glutamic endopeptidase -
  C7M26_RS02190 (C7M26_00429) claE 366708..367430 (+) 723 WP_004398603.1 LysM peptidoglycan-binding domain-containing protein -
  C7M26_RS02195 (C7M26_00430) ypbF 367493..367936 (+) 444 WP_003230531.1 YpbF family protein -
  C7M26_RS02200 (C7M26_00431) ypbG 368023..368802 (+) 780 WP_003230532.1 metallophosphoesterase -
  C7M26_RS02205 (C7M26_00432) mecB 368961..369545 (+) 585 WP_003230533.1 genetic competence negative regulator -
  C7M26_RS02210 (C7M26_00433) gudB 369701..370975 (+) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56508.11 Da        Isoelectric Point: 6.6626

>NTDB_id=239855 C7M26_RS02180 WP_003230528.1 364638..366128(+) (recS) [Bacillus subtilis strain SRCM102748]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AKELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=239855 C7M26_RS02180 WP_003230528.1 364638..366128(+) (recS) [Bacillus subtilis strain SRCM102748]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGATGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTCAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTTCCGATTAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGACACCCACCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCAACACGGAAATGG
GCTAAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCTGATATCAGATATGTGATTCATTTTCATCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAAATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTAATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(20-180)

Helicase conserved C-terminal domain (Helicase_C)

(215-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P50729

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment