Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   C8257_RS28045 Genome accession   NZ_CP028162
Coordinates   5797047..5797604 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain MRSN12280     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5792047..5802604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C8257_RS28025 (C8257_28020) pilR 5793323..5794660 (+) 1338 WP_003094694.1 two-component system response regulator PilR -
  C8257_RS28030 (C8257_28025) thiO 5794706..5795800 (-) 1095 WP_003094695.1 glycine oxidase ThiO -
  C8257_RS28035 (C8257_28030) - 5795935..5796444 (+) 510 WP_015503652.1 Tfp pilus assembly protein FimT/FimU -
  C8257_RS28040 (C8257_28035) - 5796550..5797056 (+) 507 WP_003094696.1 Tfp pilus assembly protein FimT/FimU -
  C8257_RS28045 (C8257_28040) pilV 5797047..5797604 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  C8257_RS28050 (C8257_28045) pilW 5797601..5798425 (+) 825 WP_003094698.1 type 4a pilus minor pilin PilW -
  C8257_RS28055 (C8257_28050) pilX 5798422..5799009 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  C8257_RS28060 (C8257_28055) pilY1 5799021..5802512 (+) 3492 WP_003094704.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=238738 C8257_RS28045 WP_003094697.1 5797047..5797604(+) (pilV) [Pseudomonas aeruginosa strain MRSN12280]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=238738 C8257_RS28045 WP_003094697.1 5797047..5797604(+) (pilV) [Pseudomonas aeruginosa strain MRSN12280]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978