Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   TRNA_RS25475 Genome accession   NC_006270
Coordinates   809823..810539 (+) Length   238 a.a.
NCBI ID   WP_009329065.1    Uniprot ID   A0ABX3I5L7
Organism   Bacillus licheniformis DSM 13 = ATCC 14580     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 804823..815539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TRNA_RS25460 (BL03067) - 805026..806438 (+) 1413 WP_009329067.1 alanine/glycine:cation symporter family protein -
  TRNA_RS25465 (BL03068) treP 806627..808039 (+) 1413 WP_011197645.1 PTS system trehalose-specific EIIBC component -
  TRNA_RS25470 (BL03069) treC 808113..809801 (+) 1689 WP_003179746.1 alpha,alpha-phosphotrehalase -
  TRNA_RS25475 (BL03070) treR 809823..810539 (+) 717 WP_009329065.1 trehalose operon repressor Regulator
  TRNA_RS25480 (BL03071) - 810646..811338 (+) 693 WP_003179750.1 N-acetyltransferase -
  TRNA_RS25485 (BL03072) - 811464..815243 (+) 3780 WP_011197646.1 NTTRR-F1 domain -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27767.56 Da        Isoelectric Point: 5.8721

>NTDB_id=23857 TRNA_RS25475 WP_009329065.1 809823..810539(+) (treR) [Bacillus licheniformis DSM 13 = ATCC 14580]
MKINKYMMIYKQIAEQIDQSILNAGDILPSENDLAEQHDTSRETVRKALNVLAQNGYIQKIKGKGSVVLHREKMQFPVSG
LVSFKELSETLGKETSTTVHEFGLTHPDAYIQKQLRTSGDEEVWRVVRSRNINGERIILDKDYFIRKHVPLLTKEICEDS
IYQYLEDECGLVISYAHKEIVVEPCTAEDQEYLDLNGYEHIVVVKNFVFLDDTTLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=23857 TRNA_RS25475 WP_009329065.1 809823..810539(+) (treR) [Bacillus licheniformis DSM 13 = ATCC 14580]
ATGAAGATCAACAAGTATATGATGATTTACAAACAAATCGCGGAACAAATCGATCAAAGCATACTGAATGCCGGAGATAT
CCTGCCGTCTGAAAACGACCTTGCCGAACAGCACGACACCTCGAGGGAAACCGTTCGGAAAGCGCTGAACGTGCTTGCTC
AGAACGGATATATTCAGAAGATTAAAGGGAAGGGGTCAGTCGTGCTGCACAGGGAGAAAATGCAGTTCCCGGTTTCCGGT
TTGGTCAGCTTTAAGGAGCTTTCAGAAACGCTCGGAAAAGAGACAAGCACGACGGTCCATGAGTTCGGCTTGACGCATCC
GGACGCATATATTCAAAAGCAGCTCCGCACTTCCGGAGATGAAGAGGTATGGCGGGTTGTCAGGTCGCGGAACATCAACG
GAGAGCGTATCATCCTGGATAAAGACTATTTTATCCGCAAACACGTGCCGCTTTTAACGAAAGAAATATGCGAGGACTCG
ATCTATCAATACCTTGAAGATGAATGCGGGCTCGTCATCAGCTATGCTCATAAGGAAATTGTAGTCGAGCCATGTACGGC
AGAGGATCAAGAGTATTTGGATCTGAACGGATACGAGCACATTGTGGTCGTGAAAAATTTCGTTTTTCTTGATGATACGA
CCTTGTTTCAATATACGGAAAGCAGACACCGCCTTGATAAATTCCGGTTTGTCGATTTTGCAAGAAGAGAAAAGTAG

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

41.525

99.16

0.412

Multiple sequence alignment