Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LPL_RS11375 Genome accession   NC_006369
Coordinates   2570995..2571699 (+) Length   234 a.a.
NCBI ID   WP_011216223.1    Uniprot ID   -
Organism   Legionella pneumophila str. Lens     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2565995..2576699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPL_RS11350 (lpl2247) - 2567227..2568105 (+) 879 WP_011216219.1 lpg2327 family Dot/Icm T4SS effector -
  LPL_RS11355 (lpl2248) lem22 2568369..2568752 (+) 384 WP_011216220.1 Dot/Icm T4SS effector Lem22 -
  LPL_RS11360 (lpl2249) - 2568946..2569176 (+) 231 WP_010948035.1 exodeoxyribonuclease VII small subunit -
  LPL_RS11365 (lpl2250) - 2569157..2570053 (+) 897 WP_011216221.1 polyprenyl synthetase family protein -
  LPL_RS11370 (lpl2251) bioC 2570097..2570951 (-) 855 WP_011216222.1 malonyl-ACP O-methyltransferase BioC -
  LPL_RS11375 (lpl2252) comFC 2570995..2571699 (+) 705 WP_011216223.1 ComF family protein Machinery gene
  LPL_RS11380 (lpl2253) - 2571726..2572799 (-) 1074 WP_041173811.1 M50 family metallopeptidase -
  LPL_RS11385 (lpl2254) - 2572856..2573134 (-) 279 WP_011216225.1 hypothetical protein -
  LPL_RS15810 (lpl2255) - 2573173..2573328 (+) 156 WP_162470365.1 hypothetical protein -
  LPL_RS11390 (lpl2256) hemA 2573452..2574726 (+) 1275 WP_011216227.1 glutamyl-tRNA reductase -
  LPL_RS11395 (lpl2257) prfA 2574710..2575798 (+) 1089 WP_010948042.1 peptide chain release factor 1 -
  LPL_RS11400 (lpl2258) prmC 2575791..2576654 (+) 864 WP_011216228.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26802.40 Da        Isoelectric Point: 9.2794

>NTDB_id=23857 LPL_RS11375 WP_011216223.1 2570995..2571699(+) (comFC) [Legionella pneumophila str. Lens]
MLQKFLSITQNLRLPSICTLCNQFHKSQLAVCSNCMEFMKQLGSCCQYCAYPLSDDTYLVCGQCVRKRPSFDSAYIAYRF
EEPLRSLIHQFKYHNGLYLASFLKQLLLNALPKSALKPDCLIPVPMHPKRLKRRGFNQAAVLTRLLARQLNIPYDLYYCQ
KIINTASQANLDGEQRRKNLRHAFYVPHVTYEHVMIVDDLLTTGSTANEMAHTLKNAGVKRVDICCCARAVTKN

Nucleotide


Download         Length: 705 bp        

>NTDB_id=23857 LPL_RS11375 WP_011216223.1 2570995..2571699(+) (comFC) [Legionella pneumophila str. Lens]
GTGCTCCAAAAATTCTTAAGTATAACACAGAACTTACGTTTACCTTCAATATGCACTCTTTGCAACCAGTTCCACAAAAG
CCAACTTGCAGTTTGCTCTAATTGCATGGAGTTTATGAAACAACTTGGATCATGCTGTCAGTACTGTGCCTACCCCCTTT
CTGATGATACGTATCTGGTTTGTGGTCAATGCGTTAGAAAAAGGCCCTCCTTTGATAGTGCTTATATAGCGTATCGTTTT
GAAGAGCCTCTGCGTAGTTTAATACATCAGTTTAAATACCATAATGGCCTTTATCTGGCCTCGTTTCTAAAGCAATTACT
TCTTAATGCCTTACCCAAAAGCGCATTGAAACCAGATTGTCTAATTCCCGTTCCCATGCATCCCAAACGATTAAAACGAA
GGGGATTTAACCAGGCTGCTGTATTAACCAGATTATTAGCTCGTCAATTAAACATCCCTTATGATTTATATTATTGTCAA
AAAATAATCAATACCGCTTCACAAGCTAACCTTGATGGAGAGCAACGAAGAAAAAATTTACGTCATGCTTTTTATGTACC
ACATGTAACTTATGAACACGTCATGATTGTTGATGACTTATTAACCACAGGCAGCACAGCCAATGAAATGGCACATACAT
TAAAAAATGCCGGAGTTAAGAGAGTAGATATATGTTGTTGTGCGCGGGCTGTAACTAAGAACTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

99.145

100

0.991
  comFC Legionella pneumophila strain ERS1305867

98.98

83.761

0.829

Multiple sequence alignment