Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   C7K40_RS08135 Genome accession   NZ_CP027771
Coordinates   1605316..1605795 (-) Length   159 a.a.
NCBI ID   WP_023610640.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain DMG1800716     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1600316..1610795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7K40_RS08115 (C7K40_08110) - 1600485..1601090 (-) 606 WP_063629614.1 response regulator transcription factor -
  C7K40_RS08120 (C7K40_08115) - 1601071..1602633 (-) 1563 WP_023612893.1 ATP-binding protein -
  C7K40_RS08125 (C7K40_08120) - 1602673..1604580 (-) 1908 WP_023612883.1 FtsX-like permease family protein -
  C7K40_RS08130 (C7K40_08125) - 1604582..1605319 (-) 738 WP_009880388.1 ABC transporter ATP-binding protein -
  C7K40_RS08135 (C7K40_08130) rcrQ 1605316..1605795 (-) 480 WP_023610640.1 ABC transporter ATP-binding protein Regulator
  C7K40_RS08140 (C7K40_08135) - 1605851..1607476 (-) 1626 Protein_1509 DUF4135 domain-containing protein -
  C7K40_RS08145 (C7K40_08140) - 1607558..1607713 (-) 156 WP_002982773.1 type A2 lanthipeptide -
  C7K40_RS08150 (C7K40_08145) lacG 1608204..1609610 (-) 1407 WP_063629613.1 6-phospho-beta-galactosidase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 18504.16 Da        Isoelectric Point: 6.6374

>NTDB_id=237219 C7K40_RS08135 WP_023610640.1 1605316..1605795(-) (rcrQ) [Streptococcus pyogenes strain DMG1800716]
MFDGDVMYNISLGRESVSGEQVIETCKRVSLYEDIRSMPMKFHTPLFRDNPSLSGGQKQRISLARELVTTPRILVLDEPT
SALDVKTERIIQKNVEALHCTRILVTHRLNTVEKADKILIMDNGKIIDYGNHHYLYKNNKDYCDLYDSYMNKYQEEEVK

Nucleotide


Download         Length: 480 bp        

>NTDB_id=237219 C7K40_RS08135 WP_023610640.1 1605316..1605795(-) (rcrQ) [Streptococcus pyogenes strain DMG1800716]
ATGTTTGATGGGGATGTGATGTATAACATTTCGCTAGGGAGAGAATCTGTTTCAGGAGAACAGGTTATTGAAACTTGTAA
AAGGGTATCACTATATGAGGATATCAGGAGTATGCCAATGAAGTTTCATACCCCACTTTTTCGAGATAATCCATCACTAT
CTGGGGGGCAAAAACAACGAATTTCTTTAGCAAGAGAGTTAGTAACTACCCCTAGAATCTTAGTTCTTGACGAACCTACA
TCAGCTTTAGATGTAAAAACTGAAAGAATAATCCAAAAAAATGTTGAGGCTTTACATTGTACGAGGATTTTGGTTACCCA
TAGACTTAATACAGTTGAAAAAGCTGATAAGATTTTAATAATGGATAATGGCAAAATTATTGACTATGGAAACCATCATT
ATTTGTACAAAAATAATAAGGATTATTGTGACTTATATGACTCGTATATGAATAAATATCAGGAGGAAGAGGTAAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(34-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

37.975

99.371

0.377
  comA/nlmT Streptococcus mutans UA159

40.268

93.711

0.377
  comA Streptococcus mitis NCTC 12261

39.597

93.711

0.371
  comA Streptococcus pneumoniae R6

38.926

93.711

0.365
  comA Streptococcus pneumoniae TIGR4

38.926

93.711

0.365
  comA Streptococcus mitis SK321

38.926

93.711

0.365
  comA Streptococcus pneumoniae D39

38.926

93.711

0.365
  comA Streptococcus pneumoniae Rx1

38.926

93.711

0.365