Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CE137_RS15330 Genome accession   NZ_CP022138
Coordinates   2917649..2918254 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Waycross strain SA20041608     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2912649..2923254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CE137_RS15315 (CE137_15315) helD 2912866..2914920 (-) 2055 WP_088758953.1 DNA helicase IV -
  CE137_RS15320 (CE137_15320) - 2915044..2915490 (+) 447 WP_001261222.1 YccF domain-containing protein -
  CE137_RS15325 (CE137_15325) yccS 2915509..2917662 (+) 2154 WP_000950869.1 YccS family putative transporter -
  CE137_RS15330 (CE137_15330) sxy/tfoX 2917649..2918254 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  CE137_RS15335 (CE137_15335) sulA 2918471..2918980 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  CE137_RS15340 (CE137_15340) ompA 2919337..2920389 (+) 1053 WP_001674965.1 porin OmpA -
  CE137_RS15345 (CE137_15345) matP 2920461..2920913 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  CE137_RS15350 (CE137_15350) - 2921099..2922859 (+) 1761 WP_000156448.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=237197 CE137_RS15330 WP_001202375.1 2917649..2918254(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Waycross strain SA20041608]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=237197 CE137_RS15330 WP_001202375.1 2917649..2918254(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Waycross strain SA20041608]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCTAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGTTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment