Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   TRNA_RS42945 Genome accession   NC_006270
Coordinates   4207228..4207740 (-) Length   170 a.a.
NCBI ID   WP_003178024.1    Uniprot ID   A0A6I1MGI1
Organism   Bacillus licheniformis DSM 13 = ATCC 14580     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4202228..4212740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TRNA_RS43790 (BL07079) - 4202622..4202753 (-) 132 WP_229098623.1 hypothetical protein -
  TRNA_RS42920 (BL00089) - 4202920..4203396 (+) 477 WP_009330029.1 spore coat protein -
  TRNA_RS42925 (BL00095) - 4203439..4203858 (-) 420 WP_003178013.1 universal stress protein -
  TRNA_RS42930 (BL00096) - 4203876..4205342 (-) 1467 WP_003178015.1 SulP family inorganic anion transporter -
  TRNA_RS42935 (BL00090) - 4205558..4206859 (+) 1302 WP_009330030.1 MFS transporter -
  TRNA_RS42940 (BL00098) rpsR 4206937..4207176 (-) 240 WP_003178022.1 30S ribosomal protein S18 -
  TRNA_RS42945 (BL00099) ssbA 4207228..4207740 (-) 513 WP_003178024.1 single-stranded DNA-binding protein SsbA Machinery gene
  TRNA_RS42950 (BL00100) rpsF 4207787..4208074 (-) 288 WP_003178026.1 30S ribosomal protein S6 -
  TRNA_RS42955 (BL00101) ychF 4208188..4209288 (-) 1101 WP_003178027.1 redox-regulated ATPase YchF -
  TRNA_RS42965 (BL05397) - 4209467..4209673 (-) 207 WP_011201785.1 DUF951 domain-containing protein -
  TRNA_RS42970 (BL00102) - 4209761..4210774 (-) 1014 WP_003178030.1 hypothetical protein -
  TRNA_RS42975 (BL00091) yyaC 4211078..4211695 (+) 618 WP_003178032.1 spore protease YyaC -
  TRNA_RS42980 (BL00103) - 4211732..4212580 (-) 849 WP_003178034.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18373.01 Da        Isoelectric Point: 4.9367

>NTDB_id=23608 TRNA_RS42945 WP_003178024.1 4207228..4207740(-) (ssbA) [Bacillus licheniformis DSM 13 = ATCC 14580]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYENQQGQRVYVTEVQAESVQFLEPKGGGSGSGGYSGGQGGQHFGGGQNEPAPFGGSQNNQNRNQGNSFNDDPFANDGKP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=23608 TRNA_RS42945 WP_003178024.1 4207228..4207740(-) (ssbA) [Bacillus licheniformis DSM 13 = ATCC 14580]
ATGCTTAACCGAGTTGTTTTAGTCGGCAGACTGACAAAGGACCCAGAGCTTCGTTATACTCCTAGCGGTGCAGCTGTTGC
CACCTTTACGCTTGCTGTCAATCGTACGTTTACGAATCAGCAGGGTGAACGTGAAGCTGATTTCATCAACTGTGTTGTCT
GGAGAAGACAAGCCGAAAACGTTGCAAATTTCCTTAAAAAAGGAAGTCTTGCGGGTGTAGATGGACGTTTGCAAACGCGC
AGCTATGAAAATCAGCAGGGACAGCGTGTATACGTCACGGAAGTTCAAGCTGAAAGTGTTCAATTTCTGGAGCCTAAAGG
CGGCGGTTCTGGTTCCGGCGGTTACAGCGGAGGCCAGGGAGGCCAACACTTTGGCGGCGGACAAAATGAACCGGCTCCAT
TCGGCGGCAGTCAAAACAATCAGAATCGCAATCAAGGCAACAGCTTCAATGACGATCCATTCGCAAATGATGGAAAGCCG
ATTGACATCTCTGATGACGACTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I1MGI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

84.302

100

0.853
  ssb Latilactobacillus sakei subsp. sakei 23K

58.96

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

35.326

100

0.382

Multiple sequence alignment