Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   C6Y56_RS20605 Genome accession   NZ_CP027561
Coordinates   4569705..4570061 (-) Length   118 a.a.
NCBI ID   WP_085710925.1    Uniprot ID   A0A345RU46
Organism   Pseudomonas fluorescens strain G7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4564705..4575061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6Y56_RS20580 (C6Y56_20850) - 4565515..4566075 (-) 561 WP_169431426.1 DUF1285 domain-containing protein -
  C6Y56_RS20585 (C6Y56_20855) - 4566091..4566696 (-) 606 WP_169431427.1 DUF4823 domain-containing protein -
  C6Y56_RS20590 (C6Y56_20860) - 4566817..4567785 (-) 969 WP_096820964.1 radical SAM protein -
  C6Y56_RS20595 (C6Y56_20865) - 4567924..4568562 (-) 639 WP_007950805.1 TetR/AcrR family transcriptional regulator -
  C6Y56_RS20600 (C6Y56_20870) - 4568904..4569689 (-) 786 WP_169431428.1 TatD family hydrolase -
  C6Y56_RS20605 (C6Y56_20875) pilZ 4569705..4570061 (-) 357 WP_085710925.1 PilZ domain-containing protein Machinery gene
  C6Y56_RS20610 (C6Y56_20880) - 4570104..4571087 (-) 984 WP_169431429.1 DNA polymerase III subunit delta' -
  C6Y56_RS20615 (C6Y56_20885) tmk 4571080..4571712 (-) 633 WP_169431430.1 dTMP kinase -
  C6Y56_RS20620 (C6Y56_20890) mltG 4571732..4572913 (-) 1182 WP_169431431.1 endolytic transglycosylase MltG -
  C6Y56_RS20625 (C6Y56_20895) pabC 4572917..4573732 (-) 816 WP_169431432.1 aminodeoxychorismate lyase -
  C6Y56_RS20630 (C6Y56_20900) fabF 4573732..4574976 (-) 1245 WP_007908259.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12794.73 Da        Isoelectric Point: 9.8813

>NTDB_id=235840 C6Y56_RS20605 WP_085710925.1 4569705..4570061(-) (pilZ) [Pseudomonas fluorescens strain G7]
MNEPVSPGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKSYKLGDEVFMLLHLMDEAEKIPVAGKVAWITPKGAQG
NRAAGVGVQFNDGDNTARSRIETHLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=235840 C6Y56_RS20605 WP_085710925.1 4569705..4570061(-) (pilZ) [Pseudomonas fluorescens strain G7]
ATGAATGAACCCGTCAGCCCGGGGCCGCGCAACGGCATTTTGTCCCTGACCATCAAGGACAAATCCGTGCTTTATGCCGC
TTACATGCCGTTCATCAGGAACGGTGGCCTGTTCATCCCCACCAACAAGAGCTACAAGTTGGGCGACGAGGTGTTCATGC
TGTTGCATCTGATGGATGAAGCGGAAAAGATTCCGGTGGCCGGCAAAGTCGCCTGGATCACCCCCAAAGGCGCCCAGGGC
AATCGCGCGGCCGGCGTCGGCGTGCAATTCAACGATGGCGACAACACCGCCCGCAGTCGCATCGAAACCCATCTGGCCGG
AGCCCTGAAGTCCGACCGTCCCACTCATACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345RU46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

46.296

91.525

0.424
  pilZ Legionella pneumophila strain ERS1305867

46.296

91.525

0.424