Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   TRNA_RS34620 Genome accession   NC_006270
Coordinates   2555758..2556051 (-) Length   97 a.a.
NCBI ID   WP_003183466.1    Uniprot ID   -
Organism   Bacillus licheniformis DSM 13 = ATCC 14580     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2550758..2561051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TRNA_RS34575 (BL01563) tasA 2551134..2551928 (-) 795 WP_003183447.1 biofilm matrix protein TasA -
  TRNA_RS34580 (BL01564) sipW 2552002..2552586 (-) 585 WP_003183449.1 signal peptidase I SipW -
  TRNA_RS34585 (BL01565) tapA 2552583..2553311 (-) 729 WP_011198112.1 amyloid fiber anchoring/assembly protein TapA -
  TRNA_RS34590 (BL01553) - 2553588..2553908 (+) 321 WP_003183454.1 YqzG/YhdC family protein -
  TRNA_RS34595 (BL05265) - 2553938..2554120 (-) 183 WP_003183456.1 YqzE family protein -
  TRNA_RS34600 (BL01566) comGG 2554209..2554574 (-) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  TRNA_RS34605 (BL01567) comGF 2554587..2555075 (-) 489 WP_011201694.1 competence type IV pilus minor pilin ComGF -
  TRNA_RS34610 (BL01568) comGE 2554984..2555331 (-) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  TRNA_RS34615 (BL01569) comGD 2555315..2555752 (-) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -
  TRNA_RS34620 (BL01570) comGC 2555758..2556051 (-) 294 WP_003183466.1 competence type IV pilus major pilin ComGC Machinery gene
  TRNA_RS34625 (BL01571) comGB 2556065..2557099 (-) 1035 WP_011198115.1 competence type IV pilus assembly protein ComGB Machinery gene
  TRNA_RS34630 (BL01572) comGA 2557089..2558153 (-) 1065 WP_003183477.1 competence type IV pilus ATPase ComGA Machinery gene
  TRNA_RS34635 (BL01573) - 2558310..2559149 (-) 840 WP_003183480.1 STAS domain-containing protein -
  TRNA_RS34645 (BL01574) - 2559391..2559768 (-) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  TRNA_RS34650 (BL01554) - 2559977..2560222 (+) 246 WP_003183483.1 DUF2626 domain-containing protein -
  TRNA_RS34655 (BL01575) - 2560260..2560898 (-) 639 WP_003183485.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10725.62 Da        Isoelectric Point: 9.1200

>NTDB_id=23579 TRNA_RS34620 WP_003183466.1 2555758..2556051(-) (comGC) [Bacillus licheniformis DSM 13 = ATCC 14580]
MNEKGFTLIEMLVVMLVISILLLITIPNVTKHNQSIQKKGCEGLINMVQAQITAYQMDHDGKTPNRAELESEGYIKKNLK
CPNGKAIKISNGKAQAD

Nucleotide


Download         Length: 294 bp        

>NTDB_id=23579 TRNA_RS34620 WP_003183466.1 2555758..2556051(-) (comGC) [Bacillus licheniformis DSM 13 = ATCC 14580]
GTGAATGAAAAGGGATTTACACTGATAGAAATGTTAGTCGTCATGCTCGTTATCTCCATCCTGCTGTTGATCACCATTCC
GAATGTGACCAAGCATAACCAAAGCATCCAAAAGAAAGGATGCGAAGGATTAATCAATATGGTTCAAGCGCAGATCACGG
CCTATCAGATGGATCATGACGGGAAAACGCCGAACAGGGCGGAGCTTGAATCTGAAGGTTACATAAAAAAGAACTTAAAG
TGTCCGAATGGGAAAGCAATTAAAATTTCAAACGGCAAAGCACAGGCTGATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

68.041

100

0.68
  comGC Staphylococcus aureus MW2

44.211

97.938

0.433
  comGC Staphylococcus aureus N315

44.211

97.938

0.433

Multiple sequence alignment