Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CSB85_RS30040 Genome accession   NZ_CP027174
Coordinates   6297077..6297721 (-) Length   214 a.a.
NCBI ID   WP_003085214.1    Uniprot ID   A0A0H2ZLY6
Organism   Pseudomonas aeruginosa strain AR_0230     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6292077..6302721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSB85_RS30010 - 6292526..6293578 (+) 1053 WP_031638511.1 pyocin knob domain-containing protein -
  CSB85_RS30015 - 6293578..6293880 (+) 303 WP_003113177.1 hypothetical protein -
  CSB85_RS30020 (CSB85_6071) - 6293877..6294107 (+) 231 WP_003161916.1 hypothetical protein -
  CSB85_RS30025 (CSB85_6072) - 6294526..6295131 (+) 606 WP_003117978.1 aminodeoxychorismate/anthranilate synthase component II -
  CSB85_RS30030 (CSB85_6073) trpD 6295133..6296179 (+) 1047 WP_003161915.1 anthranilate phosphoribosyltransferase -
  CSB85_RS30035 (CSB85_6074) trpC 6296179..6297015 (+) 837 WP_003161914.1 indole-3-glycerol phosphate synthase TrpC -
  CSB85_RS30040 (CSB85_6075) crp 6297077..6297721 (-) 645 WP_003085214.1 cAMP-activated global transcriptional regulator CRP Regulator
  CSB85_RS30045 (CSB85_6076) - 6297993..6298415 (+) 423 WP_003161913.1 OsmC family protein -
  CSB85_RS30050 (CSB85_6077) speD 6298735..6299529 (+) 795 WP_003101641.1 adenosylmethionine decarboxylase -
  CSB85_RS30055 (CSB85_6078) coq7 6299584..6300231 (-) 648 WP_003085224.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  CSB85_RS30060 (CSB85_6079) - 6300331..6300669 (-) 339 WP_003085225.1 histidine triad nucleotide-binding protein -
  CSB85_RS30065 (CSB85_6080) - 6300748..6302229 (+) 1482 WP_003121853.1 AAA family ATPase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24225.01 Da        Isoelectric Point: 8.0525

>NTDB_id=231063 CSB85_RS30040 WP_003085214.1 6297077..6297721(-) (crp) [Pseudomonas aeruginosa strain AR_0230]
MVAITHTPKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEK
EGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLDVTGRVARTLLDLCQQPD
AMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVFGTR

Nucleotide


Download         Length: 645 bp        

>NTDB_id=231063 CSB85_RS30040 WP_003085214.1 6297077..6297721(-) (crp) [Pseudomonas aeruginosa strain AR_0230]
ATGGTAGCTATTACCCACACACCCAAACTCAAACACCTAGACAAGCTGCTCGCACACTGTCACCGCCGCCGCTACACCGC
AAAGAGCACCATCATCTATGCCGGCGATCGCTGCGAAACGCTGTTCTTCATCATCAAGGGTTCGGTCACCATCCTCATCG
AGGACGACGACGGCCGCGAAATGATCATCGGCTACCTCAACAGCGGTGATTTCTTCGGCGAGCTGGGATTGTTCGAAAAG
GAAGGCAGCGAACAGGAACGCAGCGCCTGGGTTCGTGCCAAGGTGGAATGCGAAGTCGCCGAGATCAGCTATGCGAAGTT
CCGCGAACTGTCGCAGCAGGACTCGGAGATCCTCTACACCCTCGGCAGCCAGATGGCCGACCGCCTGCGCAAGACCACCC
GCAAGGTGGGCGACCTGGCCTTCCTCGACGTCACCGGACGCGTCGCCCGCACCTTGCTGGACCTGTGCCAGCAACCGGAC
GCCATGACCCACCCGGACGGCATGCAGATCAAGATCACCCGCCAGGAGATCGGCCGGATCGTCGGCTGCTCGCGGGAAAT
GGTCGGACGCGTGCTGAAGAGCCTGGAGGAGCAGGGCCTGGTGCATGTGAAAGGAAAGACCATGGTGGTCTTCGGCACCC
GCTGA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(22-114)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(146-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZLY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

67.327

94.393

0.636
  crp Haemophilus influenzae Rd KW20

60.396

94.393

0.57
  crp Acinetobacter baumannii D1279779

54.545

92.523

0.505

Multiple sequence alignment