Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CYQ10_RS02060 Genome accession   NZ_CP027118
Coordinates   416939..417571 (-) Length   210 a.a.
NCBI ID   WP_000242761.1    Uniprot ID   -
Organism   Escherichia coli strain 26561     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 411939..422571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYQ10_RS02035 (CYQ10_02035) yhfG 412071..412238 (+) 168 WP_000736862.1 YhfG family protein -
  CYQ10_RS02040 (CYQ10_02040) fic 412228..412830 (+) 603 WP_001280641.1 putative adenosine monophosphate-protein transferase Fic -
  CYQ10_RS02045 (CYQ10_02045) pabA 412862..413425 (+) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  CYQ10_RS02050 (CYQ10_02050) argD 413511..414731 (+) 1221 WP_000963792.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  CYQ10_RS02055 (CYQ10_02055) yhfK 414798..416888 (-) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  CYQ10_RS02060 (CYQ10_02060) crp 416939..417571 (-) 633 WP_000242761.1 cAMP-activated global transcriptional regulator CRP Regulator
  CYQ10_RS02070 (CYQ10_02070) yhfA 417873..418277 (+) 405 WP_001148908.1 OsmC family protein -
  CYQ10_RS02075 (CYQ10_02075) prkB 418332..419201 (-) 870 WP_001274680.1 phosphoribulokinase -
  CYQ10_RS02080 (CYQ10_02080) yheU 419255..419473 (-) 219 WP_000907085.1 YheU family protein -
  CYQ10_RS02085 (CYQ10_02085) yheT 419467..420489 (-) 1023 WP_061362245.1 hydrolase -
  CYQ10_RS02090 (CYQ10_02090) yheS 420489..422402 (-) 1914 WP_000634798.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23644.41 Da        Isoelectric Point: 8.2710

>NTDB_id=230169 CYQ10_RS02060 WP_000242761.1 416939..417571(-) (crp) [Escherichia coli strain 26561]
MVLGKTQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=230169 CYQ10_RS02060 WP_000242761.1 416939..417571(-) (crp) [Escherichia coli strain 26561]
ATGGTGCTTGGCAAAACGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATTGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.238

100

0.952
  crp Haemophilus influenzae Rd KW20

78.049

97.619

0.762
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment