Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   FORC77_RS11325 Genome accession   NZ_CP027030
Coordinates   2295266..2298670 (-) Length   1134 a.a.
NCBI ID   WP_045623995.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_077     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2290266..2303670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC77_RS11305 (FORC77_2056) - 2291211..2291639 (+) 429 WP_011078263.1 HIT domain-containing protein -
  FORC77_RS11310 (FORC77_2057) - 2291748..2291978 (-) 231 WP_011078264.1 FeoC-like transcriptional regulator -
  FORC77_RS11315 (FORC77_2058) feoB 2291975..2294251 (-) 2277 WP_045595779.1 Fe(2+) transporter permease subunit FeoB -
  FORC77_RS11320 - 2294251..2294478 (-) 228 WP_011078266.1 FeoA family protein -
  FORC77_RS11325 (FORC77_2060) tfoS 2295266..2298670 (-) 3405 WP_045623995.1 AraC family transcriptional regulator Regulator
  FORC77_RS11330 (FORC77_2061) znuA 2298842..2299717 (-) 876 WP_045623996.1 zinc ABC transporter substrate-binding protein ZnuA -
  FORC77_RS11335 (FORC77_2062) znuC 2299799..2300584 (+) 786 WP_045623998.1 zinc ABC transporter ATP-binding protein ZnuC -
  FORC77_RS11340 (FORC77_2063) znuB 2300577..2301362 (+) 786 WP_131069982.1 zinc ABC transporter permease subunit ZnuB -
  FORC77_RS11345 (FORC77_2064) sucD 2301445..2302317 (-) 873 WP_011149794.1 succinate--CoA ligase subunit alpha -
  FORC77_RS11350 (FORC77_2065) sucC 2302317..2303483 (-) 1167 WP_011078272.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 1134 a.a.        Molecular weight: 126647.33 Da        Isoelectric Point: 5.3927

>NTDB_id=229982 FORC77_RS11325 WP_045623995.1 2295266..2298670(-) (tfoS) [Vibrio vulnificus strain FORC_077]
MLRILAWLLLAGLTLPFKALALDGNSAIFYPLPGQEQGTFVAAKNLFVGGDGGLWIHDVHGKVQYFDGNTLLPKRGSLLE
FPSEQVAFHQGSFWTFVANEVFQTYPNQKRQLAFSLNPGAEIRKIGSSDGHIWVSDGINFYDYDIESKELKTYSLLSLYQ
NNQSSYVYINDAKRVLSKWVLGTTSGAYLSQGEQFTHIKASAKHFVAKLYFSPTRRELLVGTLNGAALIDILKPTQKNIM
IGESHVLSMTETNQEYWIGTEHGLYSYSFLTGQVAKVKAAGAQDVSPDNRKIYSLVNDEQGGIWVATNSGILYYSLFGRK
FERLNNITEEKASRFNGNITKIVYASDETIWFKDANNLYRAIGVNKQYSRVRLPIKVNDFALEDGNIWIASEQGLYIYDT
NQYKLRSFDLPSYLKGKEIDFVSVSPQGKVWISSGYRLAAIGVADGRFQDYGDRWIASQNLPARILGLEVDQKVPLIVRT
DHGAYVLENDKIRFERNTQSFGESVDIAEAKDGSLWFAGTHGIYRKDPTEKTLGELALPQENVKPICLVTDASGIWMVSS
IGLSFYNFDGELRKHFGSRSGIMSNEFVEGACAASFGEAQSGSVLVLGSKYGLVFADRDDLMVSKLPEPRVVISQVRIDD
QVANIGQKEWQLPELAYGSAISFGLGVMPNAYGETLYYRLNQEHWQTTEAGQVSFEHLAAGDYLLSVKTSLVAGDSVQVR
FTVLHPWYQTTMAMAIFVLLIVALGGLVVFWRSRYVSVQNRELTALVALKTNQLRHQSRVLLTSNQQLRKQIQVRNLLVD
NVARSLRQSVDALLSKLSVEPASEYQEHQMRIAMLLEELKSSPSDGTDGHLQNFNVSHIIQSVVDVWEDELNKSGVQVHI
SGESDDYRVAVGQFNLDVIFNSVFASVLKRAYRGQMLDIVIREQNDFVEVSFIDFGQPFSTSTEAEDSAGVESTKVDTAI
EKLPALVEQSGGRLSLFSSAERNKIEILWPKAVESLINDEEPSIFVDSVEPSPVTEVLSEAVLSPEQLWLAKVEAMVAEH
YTNPEFGTAMAAKKLYVSERSLQRRFKSASSRTFTDYLTEVRLEKACESLLAGEKVVDVAFASGFNDPSYFSQRFKLYFG
VPPSKFASDALESE

Nucleotide


Download         Length: 3405 bp        

>NTDB_id=229982 FORC77_RS11325 WP_045623995.1 2295266..2298670(-) (tfoS) [Vibrio vulnificus strain FORC_077]
TTGCTGCGTATTCTTGCCTGGCTTCTACTCGCTGGGCTTACACTACCGTTCAAAGCGCTAGCTTTGGACGGAAACTCTGC
CATATTTTACCCACTGCCTGGACAGGAGCAGGGAACCTTTGTTGCTGCTAAAAATCTCTTTGTTGGCGGTGATGGTGGTT
TATGGATACATGACGTGCACGGCAAAGTGCAATATTTCGATGGTAATACCTTGCTGCCGAAACGCGGCAGCCTTCTAGAG
TTTCCTTCTGAGCAAGTAGCCTTTCACCAAGGCAGTTTTTGGACTTTTGTCGCGAATGAAGTCTTCCAAACGTACCCCAA
TCAGAAACGTCAGTTAGCGTTTAGCTTAAATCCGGGGGCAGAAATCAGAAAAATTGGCAGCTCAGATGGTCACATTTGGG
TGAGTGATGGCATCAATTTTTATGACTACGATATTGAATCAAAAGAATTAAAAACTTATTCCTTACTCTCGTTGTATCAA
AACAATCAGAGTAGTTACGTCTACATCAATGATGCAAAGCGGGTTTTAAGCAAATGGGTACTCGGTACCACATCGGGAGC
TTACCTATCACAAGGTGAGCAATTTACCCATATCAAAGCGTCAGCGAAGCATTTCGTTGCCAAACTGTACTTTTCTCCGA
CTCGTCGTGAGTTACTGGTGGGGACGCTAAATGGCGCTGCGCTCATTGATATTTTAAAGCCGACTCAAAAAAACATCATG
ATTGGAGAGTCTCATGTGCTTTCGATGACAGAAACCAATCAAGAATATTGGATTGGCACGGAACATGGTCTGTACAGTTA
CTCGTTTTTAACTGGACAAGTGGCCAAAGTGAAAGCGGCAGGTGCGCAAGATGTCTCTCCTGATAATCGAAAAATTTACT
CGTTGGTGAATGATGAACAAGGGGGTATTTGGGTTGCGACGAACAGTGGCATTCTCTACTACTCTCTGTTTGGCCGAAAA
TTTGAACGTCTTAATAACATCACCGAAGAAAAAGCCAGCCGTTTTAATGGCAATATCACCAAAATTGTCTATGCATCAGA
TGAAACGATTTGGTTTAAAGATGCAAACAATCTTTACCGAGCCATTGGGGTTAATAAACAATACAGCCGCGTGCGTTTGC
CGATAAAGGTGAATGACTTTGCACTTGAAGATGGCAACATCTGGATTGCTTCCGAGCAAGGTCTGTATATTTACGACACG
AATCAGTACAAACTTCGATCGTTCGATTTACCAAGTTACCTTAAAGGTAAAGAGATTGATTTTGTTTCGGTCAGCCCTCA
AGGCAAGGTTTGGATAAGTTCGGGTTATCGATTAGCTGCCATTGGCGTTGCCGATGGGCGCTTCCAAGATTATGGCGATC
GGTGGATTGCCAGCCAAAATTTGCCCGCTCGAATTTTGGGTCTAGAAGTGGATCAAAAAGTCCCGTTAATCGTAAGAACC
GATCACGGGGCCTATGTGCTAGAAAACGACAAGATCCGTTTTGAGCGAAACACGCAGTCTTTTGGTGAAAGTGTCGATAT
TGCAGAAGCGAAAGATGGGTCGCTATGGTTTGCAGGGACTCACGGCATCTATCGTAAAGATCCCACAGAAAAAACGTTAG
GAGAGCTGGCACTTCCTCAGGAAAACGTGAAGCCTATTTGCTTAGTCACCGATGCTAGCGGCATTTGGATGGTGAGTTCA
ATTGGTCTCAGTTTTTACAATTTTGACGGAGAGCTGCGTAAGCACTTTGGGTCTCGCTCGGGCATTATGAGTAATGAGTT
CGTTGAAGGGGCATGTGCGGCTTCATTTGGAGAAGCGCAATCCGGCTCGGTGTTAGTACTGGGTTCAAAATATGGCCTGG
TATTTGCGGACCGTGATGACCTAATGGTATCCAAACTACCTGAACCTAGAGTGGTCATCAGCCAAGTTCGTATTGATGAT
CAGGTTGCAAATATCGGGCAAAAAGAGTGGCAATTGCCCGAGTTAGCGTATGGTTCCGCGATTAGTTTTGGCCTCGGCGT
GATGCCCAATGCTTACGGTGAAACGCTTTATTACCGTTTAAACCAGGAACACTGGCAAACCACAGAAGCAGGACAAGTCT
CTTTTGAACACCTTGCGGCAGGTGATTACTTGTTAAGTGTTAAAACCAGCCTAGTCGCAGGGGATTCCGTGCAAGTTCGC
TTTACGGTGTTACACCCGTGGTATCAAACTACGATGGCGATGGCAATTTTTGTCTTGCTTATCGTAGCGCTGGGCGGCTT
AGTTGTTTTCTGGCGTTCTCGTTACGTCAGTGTTCAAAACCGTGAGTTAACGGCACTGGTGGCATTGAAGACCAATCAAT
TGCGTCATCAGAGTCGAGTGTTGCTCACCAGTAACCAACAACTTCGTAAACAGATCCAAGTTAGAAATTTGCTGGTTGAC
AATGTTGCCCGTTCATTACGTCAAAGTGTGGATGCATTACTAAGCAAGCTATCGGTTGAACCTGCCTCAGAATATCAGGA
ACATCAAATGCGCATAGCAATGCTTTTGGAAGAGCTAAAAAGCTCGCCCAGCGATGGAACTGACGGGCATCTGCAAAACT
TTAACGTTAGCCATATCATTCAGTCGGTCGTTGACGTTTGGGAAGATGAACTCAATAAAAGCGGTGTTCAGGTGCACATT
TCTGGCGAATCGGACGACTATCGTGTCGCGGTAGGGCAATTTAATCTGGATGTCATTTTTAATAGTGTTTTTGCAAGTGT
GTTGAAACGCGCCTATCGTGGCCAAATGCTCGATATTGTGATCAGAGAGCAAAACGATTTTGTTGAAGTGTCGTTTATTG
ATTTTGGCCAGCCGTTTAGTACGAGTACGGAAGCCGAGGATAGCGCTGGTGTTGAGTCGACAAAAGTCGATACTGCAATC
GAGAAGCTTCCTGCTTTAGTTGAACAAAGTGGTGGACGCTTAAGCTTGTTCAGTAGCGCTGAGCGAAACAAGATCGAAAT
ACTGTGGCCGAAAGCGGTTGAATCTCTGATAAATGATGAAGAGCCAAGCATCTTTGTTGATTCAGTCGAACCGTCTCCAG
TTACGGAAGTCTTATCCGAAGCTGTTCTGTCGCCAGAGCAGCTATGGTTGGCGAAGGTCGAGGCTATGGTGGCAGAGCAT
TATACAAACCCAGAATTTGGCACGGCAATGGCGGCCAAAAAGCTCTATGTTTCTGAGCGCAGCTTACAGCGACGGTTTAA
ATCAGCGAGCTCTCGTACATTTACGGATTACCTCACGGAAGTACGTTTAGAAAAAGCATGCGAAAGTTTGTTGGCTGGTG
AAAAAGTGGTCGATGTGGCTTTCGCATCGGGATTTAATGATCCTTCTTACTTTAGTCAACGTTTTAAACTGTACTTTGGT
GTACCCCCTTCAAAATTTGCCAGTGACGCTCTAGAGTCGGAATAA

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_18)

(1052-1126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

39.478

100

0.4