Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   RK60_RS10275 Genome accession   NZ_CP026968
Coordinates   1942123..1942836 (+) Length   237 a.a.
NCBI ID   WP_016170550.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDAARGOS_1     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1937123..1947836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK60_RS10200 (RK60_10200) - 1937458..1937721 (-) 264 WP_001205732.1 hypothetical protein -
  RK60_RS10205 (RK60_10205) - 1937730..1937990 (-) 261 WP_000291504.1 DUF1108 family protein -
  RK60_RS10210 (RK60_10210) - 1937995..1938297 (-) 303 WP_016170555.1 DUF2482 family protein -
  RK60_RS10215 (RK60_10215) - 1938390..1938551 (-) 162 WP_000066011.1 DUF1270 domain-containing protein -
  RK60_RS10220 (RK60_10220) - 1938548..1938868 (-) 321 WP_001120936.1 DUF771 domain-containing protein -
  RK60_RS15155 - 1939017..1939116 (-) 100 Protein_1905 hypothetical protein -
  RK60_RS10230 (RK60_10230) - 1939113..1939439 (-) 327 WP_001025595.1 hypothetical protein -
  RK60_RS10240 (RK60_10240) - 1939766..1940005 (-) 240 WP_001294156.1 hypothetical protein -
  RK60_RS10245 (RK60_10245) - 1940064..1940267 (+) 204 WP_016170553.1 hypothetical protein -
  RK60_RS15160 - 1940276..1940359 (-) 84 Protein_1909 hypothetical protein -
  RK60_RS10250 (RK60_10250) - 1940384..1941127 (-) 744 WP_016170552.1 phage antirepressor KilAC domain-containing protein -
  RK60_RS10255 (RK60_10255) - 1941178..1941507 (+) 330 WP_016170551.1 hypothetical protein -
  RK60_RS10260 (RK60_10260) - 1941496..1941711 (-) 216 WP_001025404.1 MW1434 family type I TA system toxin -
  RK60_RS10265 (RK60_10265) - 1941727..1941990 (-) 264 WP_000854072.1 helix-turn-helix transcriptional regulator -
  RK60_RS10270 (RK60_10270) - 1941987..1942160 (-) 174 WP_001801500.1 hypothetical protein -
  RK60_RS10275 (RK60_10275) irvR 1942123..1942836 (+) 714 WP_016170550.1 XRE family transcriptional regulator Regulator
  RK60_RS10280 (RK60_10280) - 1942852..1943784 (+) 933 WP_016170549.1 exonuclease domain-containing protein -
  RK60_RS10285 (RK60_10285) - 1943790..1944131 (+) 342 WP_000591749.1 hypothetical protein -
  RK60_RS10290 (RK60_10290) - 1944335..1944517 (+) 183 WP_000705248.1 hypothetical protein -
  RK60_RS10295 (RK60_10295) - 1944617..1945081 (+) 465 WP_000825947.1 hypothetical protein -
  RK60_RS10300 (RK60_10300) - 1945140..1946177 (+) 1038 WP_016170481.1 tyrosine-type recombinase/integrase -
  RK60_RS10305 (RK60_10305) sph 1946234..1947060 (+) 827 Protein_1921 sphingomyelin phosphodiesterase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27016.64 Da        Isoelectric Point: 5.4202

>NTDB_id=229832 RK60_RS10275 WP_016170550.1 1942123..1942836(+) (irvR) [Staphylococcus aureus strain FDAARGOS_1]
MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVFEVGKSDIDTTYKDDNDITSI
YNKLTPPRQKNVLNYANEQLEEQNSKGDNVVDINSYKQEKTPVNVNGCVSAGVGERLHDETLFTEMVKGPIPTHDLALKV
NGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKDYDDLHFYRNESVRLIGKVIL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=229832 RK60_RS10275 WP_016170550.1 1942123..1942836(+) (irvR) [Staphylococcus aureus strain FDAARGOS_1]
ATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACT
TGCTGAACTCATTAACATAAAACCATCTACTTTAAGCGATTATTTAAATTTACGTTCCAACCCCTCTCACGGCGTTATAC
AAAGGATAGCTGATGTTTTCGAGGTTGGTAAAAGCGACATAGATACTACATACAAAGACGATAACGACATCACTTCCATA
TACAACAAACTCACACCTCCCCGCCAAAAAAACGTACTTAACTATGCAAATGAACAATTGGAAGAACAGAATTCTAAAGG
AGATAACGTTGTAGATATTAATTCATATAAACAGGAGAAAACTCCAGTTAACGTCAATGGTTGCGTCTCTGCTGGTGTAG
GAGAACGTTTACACGATGAAACGCTATTTACTGAAATGGTTAAAGGACCTATCCCCACACACGATTTAGCGTTAAAAGTA
AATGGTGATTCTATGGAACCTATGTTTAAAGACGGTGAAATTATATTCGTAGAGAAAACTCACAATATAAAGAATGGACA
AATTGGTATATTCATCATTGAAGAAGAAGCGTACGTTAAGAAAGTCTTTGTTGAAGATGATAGATTGACTCTAGTTTCAC
TAAATAAAGATTACGACGATCTACACTTTTATAGAAATGAAAGTGTGAGGTTAATTGGAAAAGTTATTTTATAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(127-236)

Helix-turn-helix (HTH_3)

(13-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

33.929

100

0.401