Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   CA934_RS03445 Genome accession   NZ_CP021259
Coordinates   715105..717312 (-) Length   735 a.a.
NCBI ID   WP_106224869.1    Uniprot ID   -
Organism   Legionella pneumophila strain D-7708     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 710105..722312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA934_RS03425 - 710610..712538 (-) 1929 WP_106224865.1 hypothetical protein -
  CA934_RS03430 - 712666..713058 (-) 393 WP_106224866.1 hypothetical protein -
  CA934_RS03435 - 713195..713572 (+) 378 WP_106224867.1 hypothetical protein -
  CA934_RS03440 - 713772..715079 (+) 1308 WP_192877317.1 tetratricopeptide repeat protein -
  CA934_RS03445 comEC 715105..717312 (-) 2208 WP_106224869.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CA934_RS03450 pilE 717390..717839 (-) 450 WP_027223681.1 type IV pilin protein Machinery gene
  CA934_RS03455 - 717851..721360 (-) 3510 WP_027223682.1 PilC/PilY family type IV pilus protein -
  CA934_RS03460 - 721373..721885 (-) 513 WP_106224870.1 pilus assembly protein -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 83214.74 Da        Isoelectric Point: 9.7414

>NTDB_id=229159 CA934_RS03445 WP_106224869.1 715105..717312(-) (comEC) [Legionella pneumophila strain D-7708]
MEIFCFLTGILYAYTYNIYLTLAVPLLFYITPRYPIVLFFLAGWGFALIHQWIVSPKRMPDTQVITQAQLEGTIASIPMQ
RPNKTQFHFAIEKINNKPAQGLIQLTWYNKPPALRAGQRWQLSVKLKKPRNFRNPGGFNYVRYLATRHIHWAGYIRYGNN
KLISNHPSTFSWLTVREKIADALTKLAPDTETAGIIEALTINITHHISPEHWNLFRRTGTVHLFGISGEHIALVSGVFFI
VIRWLWSMSYRCCLFLPANTIASIGGLLAALPYAFLAGFEPPVQRALIGCVLYTIYAIGKQRFSPWQIWRYALFLVLCIE
PHAVFLQGFYFSFLAVACLLLTHQRWPLKNYKKTLALQLSCLIGLMPLTLHWYSYGSINGFLANLFAIPLVSFLIVPLAL
MTMIMSSFDWSWILMKPLAVFVALLLKGLTYVEQIAGINITLSITSVTMMLAMTAGLFLRVLLPVKPFKHLAILWIIIPL
FPPHTAIYQGEALINILDVGQGLAVAIQTQHHVLLYDTGDSFFQGSDLGQMAIIPFFRSSGIKTIDNIVISHPDKDHKGG
LNSIEKEMQVNQLIVNDPHFYKRGSNCHSYPQWQWDGVSFRFLPIRESFTKKNNNSCILQVSNSTGRVLLTGDIEKAAED
YLIRNYGSQLASEILVVPHHGSKTSSSYRFLLEVNPLYAIASLGFDNRFKFPDSKTLQSMKTLGITFFRTDECGMAEIKL
PASGKINKPTCMQAE

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=229159 CA934_RS03445 WP_106224869.1 715105..717312(-) (comEC) [Legionella pneumophila strain D-7708]
ATGGAAATTTTTTGCTTTTTAACAGGCATCCTTTATGCCTATACCTATAATATTTATCTAACTCTTGCAGTTCCTTTACT
CTTTTACATCACACCAAGATATCCGATTGTCCTGTTCTTCCTTGCCGGGTGGGGCTTTGCCCTGATTCACCAGTGGATTG
TATCACCCAAGAGAATGCCTGATACGCAAGTAATCACTCAAGCACAATTGGAAGGAACAATTGCTTCCATCCCCATGCAA
CGTCCCAACAAAACTCAATTCCATTTTGCAATTGAAAAAATTAATAATAAACCTGCTCAAGGCTTAATCCAATTGACCTG
GTACAACAAACCACCGGCCTTACGAGCTGGTCAGCGATGGCAACTTTCAGTGAAACTAAAAAAACCTCGTAATTTCCGCA
ACCCGGGAGGTTTTAATTATGTACGCTACCTGGCAACTCGTCATATCCATTGGGCGGGTTATATTCGTTATGGGAATAAT
AAGCTAATTAGCAATCACCCCTCCACTTTCAGTTGGTTAACTGTACGTGAAAAAATAGCGGATGCGCTGACAAAACTGGC
CCCTGATACAGAAACAGCAGGCATCATTGAAGCATTGACGATAAATATCACTCATCATATCAGTCCCGAACATTGGAATT
TGTTCCGAAGAACAGGAACAGTGCATTTATTCGGGATATCAGGAGAGCACATCGCTTTGGTTTCTGGAGTTTTCTTTATC
GTTATAAGATGGCTTTGGTCAATGAGCTATCGTTGTTGTTTATTCTTACCAGCCAATACCATAGCGAGTATCGGTGGATT
ATTGGCTGCCTTGCCCTATGCCTTTTTAGCCGGATTTGAACCCCCTGTACAGCGTGCTTTAATTGGTTGTGTACTTTACA
CAATATACGCCATTGGAAAACAACGTTTTAGCCCATGGCAAATATGGAGATATGCCTTATTTTTAGTCTTGTGCATTGAA
CCCCACGCTGTATTCCTGCAAGGATTTTATTTTTCATTTCTTGCGGTGGCCTGTCTACTATTGACTCACCAACGTTGGCC
ACTGAAAAACTACAAAAAGACACTTGCATTACAATTAAGCTGCCTCATTGGATTGATGCCTTTAACTCTCCATTGGTACT
CCTATGGCTCTATCAATGGATTTCTTGCCAATTTATTTGCCATACCTTTAGTCAGCTTTCTGATAGTACCCTTGGCTTTA
ATGACTATGATTATGAGTTCATTTGATTGGTCCTGGATATTAATGAAACCATTGGCCGTGTTTGTTGCCCTGTTACTTAA
AGGGTTGACGTATGTTGAGCAAATAGCAGGAATCAATATCACCTTGTCCATCACCTCAGTAACAATGATGCTTGCTATGA
CAGCAGGTCTGTTTTTAAGAGTATTATTACCTGTCAAGCCATTCAAACACTTGGCGATCCTTTGGATTATCATTCCCTTA
TTTCCGCCTCATACTGCAATTTACCAGGGGGAAGCATTAATTAATATTTTGGATGTTGGGCAAGGGCTGGCTGTTGCGAT
ACAAACACAACACCATGTTTTACTCTACGATACGGGAGATTCATTTTTTCAAGGCAGTGATTTAGGGCAAATGGCAATAA
TACCTTTTTTTAGGTCATCTGGAATAAAAACCATTGATAACATTGTGATAAGCCATCCTGATAAAGATCATAAGGGTGGC
TTAAACTCCATTGAAAAAGAGATGCAAGTCAATCAATTAATAGTGAATGATCCCCATTTTTATAAACGTGGAAGTAATTG
TCACTCATATCCTCAATGGCAATGGGATGGGGTGAGTTTTCGTTTTTTACCGATCAGGGAGTCTTTCACTAAAAAAAATA
ATAACTCTTGTATTTTACAAGTAAGTAATTCGACTGGCAGAGTTTTATTAACGGGAGATATTGAAAAAGCGGCTGAAGAC
TACCTGATAAGAAACTATGGCAGTCAGTTGGCATCTGAAATTTTAGTTGTTCCTCATCATGGGAGTAAGACTTCCTCATC
TTATCGATTTTTACTGGAAGTAAACCCGCTTTATGCCATTGCATCTTTAGGATTTGATAATCGCTTCAAATTTCCAGATT
CTAAAACTTTGCAAAGCATGAAAACATTAGGTATCACTTTTTTTAGAACAGACGAATGCGGAATGGCAGAAATCAAACTA
CCTGCGTCAGGTAAAATTAACAAACCAACCTGTATGCAGGCTGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(200-464)

Domain of unknown function (DUF4131) (DUF4131)

(20-158)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Legionella pneumophila strain Lp02

92.643

99.864

0.925
  comEC Legionella pneumophila strain ERS1305867

92.109

100

0.921

Multiple sequence alignment