Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ECA_RS18220 | Genome accession | NC_004547 |
| Coordinates | 4140147..4140710 (+) | Length | 187 a.a. |
| NCBI ID | WP_011095190.1 | Uniprot ID | - |
| Organism | Pectobacterium atrosepticum SCRI1043 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 4140147..4186931 | 4140147..4140710 | within | 0 |
Gene organization within MGE regions
Location: 4140147..4186931
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECA_RS18220 (ECA3690) | ssb | 4140147..4140710 (+) | 564 | WP_011095190.1 | single-stranded DNA-binding protein | Machinery gene |
| ECA_RS18225 (ECA3691) | - | 4140956..4142812 (+) | 1857 | WP_039293548.1 | amidohydrolase | - |
| ECA_RS18230 (ECA3692) | - | 4143007..4143462 (+) | 456 | WP_011095192.1 | GNAT family N-acetyltransferase | - |
| ECA_RS18235 (ECA3693) | - | 4143714..4144145 (-) | 432 | WP_011095193.1 | carboxymuconolactone decarboxylase family protein | - |
| ECA_RS18240 (ECA3694) | - | 4144286..4144435 (-) | 150 | Protein_3643 | GNAT family N-acetyltransferase | - |
| ECA_RS18245 (ECA3695) | - | 4144591..4144983 (-) | 393 | WP_011095195.1 | Mor transcription activator family protein | - |
| ECA_RS18250 (ECA3696) | - | 4144980..4145402 (-) | 423 | WP_011095196.1 | gp16 family protein | - |
| ECA_RS18255 (ECA3697) | - | 4145380..4145580 (-) | 201 | WP_011095197.1 | hypothetical protein | - |
| ECA_RS18260 (ECA3698) | - | 4145577..4146017 (-) | 441 | WP_011095198.1 | hypothetical protein | - |
| ECA_RS18265 (ECA3699) | - | 4146028..4146327 (-) | 300 | WP_011095199.1 | hypothetical protein | - |
| ECA_RS18270 (ECA3700) | - | 4146418..4147002 (-) | 585 | WP_039295283.1 | DUF3164 family protein | - |
| ECA_RS18275 (ECA3701) | - | 4147039..4147308 (-) | 270 | WP_011095201.1 | hypothetical protein | - |
| ECA_RS18280 (ECA3702) | - | 4147336..4147593 (-) | 258 | WP_011095202.1 | phage-like protein | - |
| ECA_RS18285 (ECA3703) | - | 4147596..4148747 (-) | 1152 | WP_011095203.1 | ExeA family protein | - |
| ECA_RS18290 (ECA3704) | - | 4148757..4150526 (-) | 1770 | WP_011095204.1 | DDE-type integrase/transposase/recombinase | - |
| ECA_RS18295 (ECA3705) | - | 4150536..4151444 (-) | 909 | WP_011095205.1 | DUF3102 domain-containing protein | - |
| ECA_RS18300 (ECA3706) | - | 4151454..4151759 (-) | 306 | WP_011095206.1 | helix-turn-helix domain-containing protein | - |
| ECA_RS18305 (ECA3707) | - | 4151812..4152000 (-) | 189 | WP_011095207.1 | DNA-binding protein | - |
| ECA_RS23170 (ECA3708) | - | 4152092..4152508 (+) | 417 | WP_011095208.1 | helix-turn-helix domain-containing protein | - |
| ECA_RS18315 (ECA3709) | - | 4152527..4153063 (+) | 537 | WP_011095209.1 | hypothetical protein | - |
| ECA_RS18320 (ECA3710) | - | 4153098..4154042 (+) | 945 | WP_011095210.1 | hypothetical protein | - |
| ECA_RS18325 (ECA3711) | - | 4154162..4155169 (+) | 1008 | WP_011095211.1 | nucleoid-associated protein | - |
| ECA_RS18330 (ECA3712) | - | 4155172..4156353 (+) | 1182 | WP_011095212.1 | membrane protein | - |
| ECA_RS18335 (ECA3713) | - | 4156501..4156845 (+) | 345 | WP_011095213.1 | putative holin | - |
| ECA_RS18340 (ECA3714) | - | 4156848..4157495 (+) | 648 | WP_011095214.1 | transglycosylase SLT domain-containing protein | - |
| ECA_RS18345 (ECA3715) | - | 4157479..4158150 (+) | 672 | WP_011095215.1 | hypothetical protein | - |
| ECA_RS18350 (ECA3716) | - | 4158150..4158482 (+) | 333 | WP_011095216.1 | hypothetical protein | - |
| ECA_RS18355 (ECA3717) | - | 4158475..4158786 (+) | 312 | WP_011095217.1 | hypothetical protein | - |
| ECA_RS18360 (ECA3718) | - | 4158788..4159333 (+) | 546 | WP_011095218.1 | DUF3486 family protein | - |
| ECA_RS18365 (ECA3719) | - | 4159330..4160865 (+) | 1536 | WP_011095219.1 | hypothetical protein | - |
| ECA_RS18370 (ECA3720) | - | 4160865..4162358 (+) | 1494 | WP_011095220.1 | DUF935 domain-containing protein | - |
| ECA_RS18375 (ECA3721) | - | 4162339..4163160 (+) | 822 | WP_011095221.1 | phage minor head protein | - |
| ECA_RS18380 (ECA3722) | - | 4163157..4163606 (+) | 450 | WP_011095222.1 | phage virion morphogenesis protein | - |
| ECA_RS18385 (ECA3723) | - | 4163802..4164911 (+) | 1110 | WP_011095223.1 | peptidase | - |
| ECA_RS18390 (ECA3724) | - | 4164948..4165883 (+) | 936 | WP_011095224.1 | hypothetical protein | - |
| ECA_RS18395 (ECA3725) | - | 4165894..4166232 (+) | 339 | WP_011095225.1 | capsid cement protein | - |
| ECA_RS18400 (ECA3726) | - | 4166235..4166681 (+) | 447 | WP_011095226.1 | gp436 family protein | - |
| ECA_RS18405 (ECA3727) | - | 4166681..4167148 (+) | 468 | WP_011095227.1 | Gp37 family protein | - |
| ECA_RS18410 (ECA3728) | - | 4167142..4167369 (+) | 228 | WP_173361635.1 | hypothetical protein | - |
| ECA_RS18415 (ECA3729) | - | 4167359..4168786 (+) | 1428 | WP_011095229.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| ECA_RS18420 (ECA3730) | - | 4168786..4169310 (+) | 525 | WP_011095230.1 | phage major tail tube protein | - |
| ECA_RS18425 (ECA3731) | - | 4169317..4169517 (+) | 201 | WP_011095231.1 | hypothetical protein | - |
| ECA_RS18430 (ECA3731A) | - | 4169658..4169960 (+) | 303 | WP_011095232.1 | phage tail assembly protein | - |
| ECA_RS18435 | - | 4170035..4170304 (-) | 270 | WP_039293937.1 | hypothetical protein | - |
| ECA_RS18440 (ECA3732) | - | 4170347..4172818 (+) | 2472 | WP_011095233.1 | phage tail tape measure protein | - |
| ECA_RS18445 (ECA3733) | - | 4172818..4173702 (+) | 885 | WP_011095234.1 | phage tail protein | - |
| ECA_RS18450 (ECA3734) | - | 4173702..4173914 (+) | 213 | WP_103791629.1 | tail protein X | - |
| ECA_RS18455 (ECA3735) | - | 4173902..4175047 (+) | 1146 | WP_011095236.1 | phage late control D family protein | - |
| ECA_RS18460 (ECA3736) | - | 4175044..4175637 (+) | 594 | WP_011095237.1 | phage baseplate assembly protein V | - |
| ECA_RS18465 (ECA3737) | - | 4175664..4176512 (+) | 849 | WP_011095238.1 | AbiJ-NTD4 domain-containing protein | - |
| ECA_RS18470 (ECA3738) | - | 4176578..4176925 (+) | 348 | WP_011095239.1 | GPW/gp25 family protein | - |
| ECA_RS18475 (ECA3739) | - | 4176916..4178022 (+) | 1107 | WP_011095240.1 | baseplate assembly protein | - |
| ECA_RS18480 (ECA3740) | - | 4178015..4178590 (+) | 576 | WP_011095241.1 | phage tail protein | - |
| ECA_RS18485 (ECA3741) | - | 4178591..4180153 (+) | 1563 | WP_011095242.1 | phage tail protein | - |
| ECA_RS18490 (ECA3742) | - | 4180153..4180770 (+) | 618 | WP_011095243.1 | tail fiber assembly protein | - |
| ECA_RS18495 (ECA3743) | - | 4180822..4181157 (-) | 336 | WP_011095244.1 | hypothetical protein | - |
| ECA_RS18500 (ECA3744) | - | 4181249..4182667 (+) | 1419 | WP_011095245.1 | PLP-dependent aminotransferase family protein | - |
| ECA_RS18505 (ECA3745) | - | 4182708..4183757 (-) | 1050 | WP_011095246.1 | LacI family DNA-binding transcriptional regulator | - |
| ECA_RS18510 (ECA3746) | - | 4183757..4184809 (-) | 1053 | WP_011095247.1 | carbohydrate ABC transporter permease | - |
| ECA_RS18515 (ECA3747) | - | 4184818..4185816 (-) | 999 | WP_011095248.1 | carbohydrate ABC transporter permease | - |
| ECA_RS18520 (ECA3748) | - | 4185840..4186931 (-) | 1092 | WP_011095249.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 187 a.a. Molecular weight: 19726.69 Da Isoelectric Point: 5.2456
>NTDB_id=22628 ECA_RS18220 WP_011095190.1 4140147..4140710(+) (ssb) [Pectobacterium atrosepticum SCRI1043]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGNAGGGQPQGGWGQPQQPQGGNQFSGGAQAQQRPA
QNASSSQNNAPAQSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGNAGGGQPQGGWGQPQQPQGGNQFSGGAQAQQRPA
QNASSSQNNAPAQSNEPPMDFDDDIPF
Nucleotide
Download Length: 564 bp
>NTDB_id=22628 ECA_RS18220 WP_011095190.1 4140147..4140710(+) (ssb) [Pectobacterium atrosepticum SCRI1043]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCAGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGTGTGGTTCTGTTTGGCAAGCTGGCAGAAGTCGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAGATGCTAGGTGGACGTCAGGGCGGCGGCGCACCAGCAGGCGGTGGCAATGCAGGTGGCGGTCAGCCAC
AAGGCGGCTGGGGTCAACCTCAGCAACCGCAGGGCGGAAACCAGTTCAGCGGCGGCGCACAAGCTCAGCAGCGCCCAGCT
CAGAACGCATCTTCCTCACAAAATAATGCCCCGGCACAAAGCAACGAACCACCAATGGATTTCGACGACGATATTCCTTT
CTAA
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCAGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGTGTGGTTCTGTTTGGCAAGCTGGCAGAAGTCGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAGATGCTAGGTGGACGTCAGGGCGGCGGCGCACCAGCAGGCGGTGGCAATGCAGGTGGCGGTCAGCCAC
AAGGCGGCTGGGGTCAACCTCAGCAACCGCAGGGCGGAAACCAGTTCAGCGGCGGCGCACAAGCTCAGCAGCGCCCAGCT
CAGAACGCATCTTCCTCACAAAATAATGCCCCGGCACAAAGCAACGAACCACCAATGGATTTCGACGACGATATTCCTTT
CTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
71.429 |
100 |
0.722 |
| ssb | Glaesserella parasuis strain SC1401 |
55.208 |
100 |
0.567 |
| ssb | Neisseria meningitidis MC58 |
44.974 |
100 |
0.455 |
| ssb | Neisseria gonorrhoeae MS11 |
44.974 |
100 |
0.455 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
37.158 |
97.861 |
0.364 |