Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   VV1_RS13310 Genome accession   NC_004459
Coordinates   2853023..2854444 (+) Length   473 a.a.
NCBI ID   WP_011080626.1    Uniprot ID   A0A3Q0L6J8
Organism   Vibrio vulnificus CMCP6     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2848023..2859444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV1_RS13285 (VV1_2785) cobC 2848706..2849344 (-) 639 WP_011080621.1 alpha-ribazole phosphatase -
  VV1_RS13290 (VV1_2786) cobU 2849354..2849914 (-) 561 WP_011080622.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  VV1_RS13295 (VV1_2787) - 2849917..2850684 (-) 768 WP_011080623.1 adenosylcobinamide-GDP ribazoletransferase -
  VV1_RS13300 (VV1_2788) cobT 2850686..2851714 (-) 1029 WP_011080624.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  VV1_RS13305 (VV1_2791) - 2852251..2852949 (+) 699 WP_011080625.1 oxidoreductase -
  VV1_RS13310 (VV1_2792) sbcB 2853023..2854444 (+) 1422 WP_011080626.1 exodeoxyribonuclease I Machinery gene
  VV1_RS13315 (VV1_2793) - 2854491..2854862 (+) 372 WP_011080627.1 CidA/LrgA family protein -
  VV1_RS13320 (VV1_2794) - 2854865..2855542 (+) 678 WP_011080628.1 LrgB family protein -
  VV1_RS13325 (VV1_2796) - 2855855..2856247 (+) 393 WP_011080629.1 SulA-like leucine-rich domain-containing protein -
  VV1_RS13330 (VV1_2797) - 2856450..2857553 (+) 1104 WP_011080630.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  VV1_RS13335 (VV1_2798) - 2857627..2858031 (-) 405 WP_011080631.1 hypothetical protein -
  VV1_RS13340 (VV1_2799) - 2858270..2859037 (-) 768 WP_011080632.1 phospholipase A -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54790.05 Da        Isoelectric Point: 5.1722

>NTDB_id=22549 VV1_RS13310 WP_011080626.1 2853023..2854444(+) (sbcB) [Vibrio vulnificus CMCP6]
MQQDNQPTFFFFDYETWGTSPAKDRPSQFASVRTDENFNIIGEPLVIYCRPPADYLPAPEAALITGITPQKAQKEGLPEP
EFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAAN
IGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTMLYDGFFSPADKASMDIIRQTDPTHLAALDITFNDKR
IEPLLFRYRARNYPWTLDENEQRRWANHCREYFESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=22549 VV1_RS13310 WP_011080626.1 2853023..2854444(+) (sbcB) [Vibrio vulnificus CMCP6]
ATGCAGCAAGACAATCAGCCCACTTTCTTCTTTTTTGACTATGAGACTTGGGGAACCAGTCCAGCAAAAGATCGCCCATC
GCAATTTGCTAGCGTTCGTACCGATGAAAACTTCAATATCATCGGCGAACCATTGGTGATTTATTGTCGCCCACCTGCCG
ATTATTTACCGGCCCCCGAAGCCGCACTCATTACCGGAATTACGCCACAAAAAGCGCAGAAAGAAGGCTTACCCGAGCCA
GAATTTATCGCAAAAATCCACGCAGAGTTGTCGCGTCCGAACACCACTAGCCTTGGCTACAACAGCATTCGCTTTGATGA
CGAAGTCACGCGTTATACCTGCTATCGCAATTTCCTCGATCCCTATTCATGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATCTGCTTGATGTGATGCGAGCTTGTCACGCATTAAGACCGGAAGGCGTAGAATGGCCGGAAAATGAAGAAGGCTTTACC
AGCTTTAAACTGGAGCACCTTTCTGTGGCCAATGGCATTGAACACAGTAACGCCCATGATGCGATGGCCGATGTGATCGC
CACCATCGAAATGGCGAAAAAAGTCAAAGCCGCGCAACCCAAATTGTTTGATTACTTCTTTAGCATGCGCCATAAGCGTA
AGCTCAATGAGCTGATCGATATTGTTAACATGACCCCTTTGATGCATGTCTCTGGCATGTTAGGCCGAGAATGTCAATAC
ACCAGTTGGATTGTGCCGTTAGCTTGGCACCCGACCAACAACAATGCGGTGATTGTGGTCGACTTAGCCAAAGATCCTCA
ACCCCTCTTTGATTTGGATGCCGATGCGCTGCATGAGCGTCTTTACACTCGTCATGATGAGCTCGGCGATTTATTGCCTG
TGCCAGTTAAATTGGTGCACTTGAATAAGTGCCCGATTTTAGCGCCAGCCAAAACCCTCACAGCGGAGAACGCCGCCAAT
ATCGGCATCGACCGAGAACAATGTTTGGCAAACTTAGCCCTTATTCGCCAGCATCCAGAAGTGCGAGAAAAGTTGGTGCA
GCTGTTCTCAATTGAACGCGAGTTCGAGAAAAGTCATGATGTCGATACCATGCTGTACGACGGTTTCTTCTCGCCTGCCG
ACAAAGCCTCGATGGACATTATCCGCCAAACCGATCCAACGCACCTTGCCGCTTTGGACATCACGTTTAACGATAAACGC
ATCGAGCCACTGCTGTTTCGCTACCGTGCGCGCAATTACCCATGGACGTTGGATGAGAACGAACAGCGCCGTTGGGCGAA
TCATTGCCGCGAATACTTCGAAAGTCGAATTGAAGAGTACATGCTTAATTTGGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATGGCGATATTAAAATCCGTGTACCGCTATACTGAGAGCTTGATCTCATAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0L6J8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

80.508

99.789

0.803

Multiple sequence alignment