Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | C2U32_RS11120 | Genome accession | NZ_CP026125 |
| Coordinates | 2247042..2247557 (+) | Length | 171 a.a. |
| NCBI ID | WP_000477151.1 | Uniprot ID | V5VA61 |
| Organism | Acinetobacter baumannii strain ABNIH28 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2242042..2252557
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2U32_RS11100 (C2U32_11095) | - | 2242361..2243821 (+) | 1461 | WP_000004971.1 | amino acid permease | - |
| C2U32_RS11105 (C2U32_11100) | - | 2244098..2245303 (+) | 1206 | WP_000512698.1 | RtcB family protein | - |
| C2U32_RS20320 | - | 2245307..2245465 (+) | 159 | WP_000692859.1 | hypothetical protein | - |
| C2U32_RS11115 (C2U32_11110) | omp38 | 2245590..2246660 (-) | 1071 | WP_000777875.1 | outer membrane protein Omp38 | - |
| C2U32_RS11120 (C2U32_11115) | fimT | 2247042..2247557 (+) | 516 | WP_000477151.1 | GspH/FimT family pseudopilin | Machinery gene |
| C2U32_RS11125 (C2U32_11120) | - | 2247666..2248841 (+) | 1176 | WP_000129968.1 | thiolase family protein | - |
| C2U32_RS11130 (C2U32_11125) | - | 2248968..2249411 (+) | 444 | WP_103270872.1 | VOC family protein | - |
| C2U32_RS11135 (C2U32_11130) | - | 2249454..2249807 (-) | 354 | WP_000457785.1 | DMT family transporter | - |
| C2U32_RS11140 (C2U32_11135) | - | 2249889..2250374 (-) | 486 | WP_000935247.1 | DUF934 domain-containing protein | - |
| C2U32_RS11145 (C2U32_11140) | - | 2250367..2252010 (-) | 1644 | WP_000281766.1 | nitrite/sulfite reductase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19606.86 Da Isoelectric Point: 8.8196
>NTDB_id=224856 C2U32_RS11120 WP_000477151.1 2247042..2247557(+) (fimT) [Acinetobacter baumannii strain ABNIH28]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=224856 C2U32_RS11120 WP_000477151.1 2247042..2247557(+) (fimT) [Acinetobacter baumannii strain ABNIH28]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGCTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGCTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.976 |
97.076 |
0.427 |