NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	RK88_RS02910	Genome accession	NZ_CP026071
Coordinates	507728..508414 (+)	Length	228 a.a.
NCBI ID	WP_000692881.1	Uniprot ID	-
Organism	Staphylococcus aureus strain FDAARGOS_30
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 502728..513414

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RK88_RS02890 (RK88_002890)	-	502849..505479 (+)	2631	WP_000425358.1	valine--tRNA ligase	-
RK88_RS02895 (RK88_002895)	-	505492..506763 (+)	1272	WP_001108339.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
RK88_RS02905 (RK88_002905)	-	507024..507731 (+)	708	WP_000261106.1	A24 family peptidase	-
RK88_RS02910 (RK88_002910)	ysxA/radC	507728..508414 (+)	687	WP_000692881.1	DNA repair protein RadC	Machinery gene
RK88_RS02915 (RK88_002915)	-	508482..508766 (+)	285	WP_000171861.1	hypothetical protein	-
RK88_RS02920 (RK88_002920)	-	508882..509079 (-)	198	WP_000025835.1	hypothetical protein	-
RK88_RS02925 (RK88_002925)	-	509239..509712 (+)	474	WP_001236733.1	DUF4930 family protein	-
RK88_RS02930 (RK88_002930)	-	509786..509905 (+)	120	WP_000840603.1	hypothetical protein	-
RK88_RS02935 (RK88_002935)	mreC	510105..510947 (+)	843	WP_000911041.1	rod shape-determining protein MreC	-
RK88_RS02940 (RK88_002940)	mreD	510947..511477 (+)	531	WP_001259929.1	rod shape-determining protein MreD	-
RK88_RS02945 (RK88_002945)	rplU	511770..512078 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
RK88_RS02950 (RK88_002950)	-	512084..512404 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
RK88_RS02955 (RK88_002955)	rpmA	512416..512700 (+)	285	WP_000916187.1	50S ribosomal protein L27	-

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 25345.25 Da Isoelectric Point: 6.7572

                                >NTDB_id=223764 RK88_RS02910 WP_000692881.1 507728..508414(+) (ysxA/radC) [Staphylococcus aureus strain FDAARGOS_30]

MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI

TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREFFSI

AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

Download Length: 687 bp

                                >NTDB_id=223764 RK88_RS02910 WP_000692881.1 507728..508414(+) (ysxA/radC) [Staphylococcus aureus strain FDAARGOS_30]

TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC

AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATTGACATTAGTAATGAACTGCTTAAATCTG

CATCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT

ACATTAAAAGCGGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG

TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA

ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAATTTTTTAGTATT

GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT

AATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGAATAGATTTATTGGATCATATTATAATCGGTGATAATA

GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus gordonii str. Challis substr. CH1	39.45	95.614	0.377
radC	Streptococcus pneumoniae TIGR4	40.566	92.982	0.377
radC	Streptococcus pneumoniae R6	40.094	92.982	0.373
radC	Streptococcus pneumoniae D39	40.094	92.982	0.373

Detailed information NTG0223764