Detailed information    

insolico Bioinformatically predicted

Overview


Name   ciaH   Type   Regulator
Locus tag   SAG_RS07650 Genome accession   NC_004116
Coordinates   992317..993630 (-) Length   437 a.a.
NCBI ID   WP_000042580.1    Uniprot ID   A0AAW3HV66
Organism   Streptococcus agalactiae 2603V/R     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 987317..998630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAG_RS07630 (SAG0980) - 988797..989570 (-) 774 WP_000622398.1 DUF3307 domain-containing protein -
  SAG_RS07635 (SAG0981) - 989560..990246 (-) 687 WP_000280308.1 SatD family protein -
  SAG_RS07640 (SAG0982) ffh 990313..991878 (-) 1566 WP_000863589.1 signal recognition particle protein -
  SAG_RS07645 (SAG0983) - 991896..992228 (-) 333 WP_000402075.1 putative DNA-binding protein -
  SAG_RS07650 (SAG0984) ciaH 992317..993630 (-) 1314 WP_000042580.1 sensor histidine kinase Regulator
  SAG_RS07655 (SAG0985) ciaR 993614..994294 (-) 681 WP_000590620.1 response regulator transcription factor Regulator
  SAG_RS07660 (SAG0986) - 994456..997005 (-) 2550 WP_000859382.1 M1 family metallopeptidase -
  SAG_RS07665 (SAG0987) phoU 997151..997804 (-) 654 WP_000946330.1 phosphate signaling complex protein PhoU -
  SAG_RS07670 (SAG0988) pstB 997838..998596 (-) 759 WP_000193363.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence


Protein


Download         Length: 437 a.a.        Molecular weight: 49708.14 Da        Isoelectric Point: 9.4961

>NTDB_id=22279 SAG_RS07650 WP_000042580.1 992317..993630(-) (ciaH) [Streptococcus agalactiae 2603V/R]
MSKPIKISKFKKNVSDSHFIHFFTVFSGIFLVMTVIILQVMRYGVYSSVDSSLKYISTHPKNYINMVMSRTAAYLDNSNI
ASVKLKPGGQTVANTDIILFTSEEEVINYFDAFSNYQFLKPNKKNLGGISELTLTNIFGQDETYHAVTVKVNNPAYPNVT
YMTAIVNIDQLVNAKERYEKIIIFVMTTFWIISIGASIYLAKWAQKPIIENYERQKAFVENASHELRTPLAVLQNRLETL
FRKPNATILENSENIASSLDEVRNMRILTTNLLNLARRDDGIKPELAVIKPTLFDSIFENYDLITQENGKNFTGHNMIQD
SFKTDKTLLKQLMTILFDNAIKYTDNDGSIDFTISETDKYLFLEIADNGPGISEEDKVRIFDRFYRVDKARTRQQGGFGL
GLSLAQQIVNSLRGNITVIDNKPRGSIFKIKLPKVKG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=22279 SAG_RS07650 WP_000042580.1 992317..993630(-) (ciaH) [Streptococcus agalactiae 2603V/R]
ATGTCGAAACCGATTAAGATAAGTAAATTCAAAAAAAATGTCTCAGATAGTCATTTTATCCATTTTTTCACAGTTTTTAG
TGGTATTTTTCTGGTTATGACTGTTATCATCCTCCAAGTCATGCGCTATGGTGTTTATTCTTCTGTTGATAGTAGTTTAA
AGTATATCAGTACCCATCCTAAAAATTACATCAATATGGTTATGTCACGTACTGCTGCCTACCTAGATAACTCCAATATC
GCAAGTGTCAAGTTAAAACCCGGCGGTCAGACAGTAGCTAATACTGATATTATTCTTTTTACATCAGAAGAAGAAGTCAT
TAACTATTTTGACGCATTTTCAAACTATCAGTTTTTAAAACCTAATAAAAAAAATCTAGGTGGCATTAGTGAATTAACTT
TAACCAACATCTTTGGTCAAGATGAGACATATCATGCTGTCACCGTAAAAGTTAATAACCCTGCTTATCCTAATGTGACT
TACATGACAGCTATTGTTAATATTGATCAATTAGTAAATGCTAAAGAACGCTATGAAAAAATTATTATATTTGTCATGAC
TACTTTTTGGATTATTTCAATTGGAGCAAGTATCTACTTAGCTAAATGGGCACAAAAACCGATTATAGAAAACTACGAAA
GACAGAAGGCTTTTGTCGAAAATGCTAGCCACGAGCTGCGTACTCCCCTAGCTGTCTTACAAAATCGCCTAGAAACGCTA
TTCAGAAAACCGAATGCCACCATTTTAGAAAATAGTGAAAATATCGCTTCAAGTCTAGATGAAGTACGAAATATGCGTAT
TTTAACCACTAATCTTTTAAACTTAGCAAGACGTGATGATGGAATCAAACCAGAATTAGCTGTTATTAAGCCTACACTTT
TTGATAGTATCTTTGAGAATTATGATCTAATCACCCAAGAGAATGGTAAAAATTTTACTGGACATAATATGATCCAAGAT
AGTTTCAAAACAGATAAGACACTGCTAAAACAACTCATGACTATTTTATTTGATAATGCTATAAAATATACTGACAATGA
TGGTAGCATTGACTTTACCATATCTGAAACTGATAAGTATCTCTTTTTAGAAATCGCTGATAATGGACCAGGAATTTCAG
AGGAGGATAAAGTCAGAATTTTTGATCGTTTTTACCGTGTTGACAAAGCAAGAACACGACAACAAGGAGGGTTTGGCCTC
GGCCTTTCTTTAGCTCAACAAATCGTTAACTCACTGCGAGGTAATATTACAGTAATTGATAATAAACCTAGAGGCAGTAT
TTTTAAGATAAAACTACCAAAAGTAAAAGGTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

60.14

98.169

0.59

  ciaH Streptococcus pneumoniae Rx1

51.781

96.339

0.499

  ciaH Streptococcus pneumoniae D39

51.781

96.339

0.499

  ciaH Streptococcus pneumoniae R6

51.781

96.339

0.499

  ciaH Streptococcus pneumoniae TIGR4

51.781

96.339

0.499


Multiple sequence alignment