Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   A6J48_RS08725 Genome accession   NZ_CP020420
Coordinates   1480503..1480934 (-) Length   143 a.a.
NCBI ID   WP_002249229.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_209     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1475503..1485934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J48_RS08710 (A6J48_08610) - 1476232..1478268 (+) 2037 WP_002246738.1 M3 family metallopeptidase -
  A6J48_RS08715 (A6J48_08615) - 1478544..1479110 (-) 567 WP_002245810.1 manganese efflux pump MntP family protein -
  A6J48_RS08720 (A6J48_08620) - 1479562..1480062 (-) 501 WP_002220237.1 REP-associated tyrosine transposase -
  A6J48_RS08725 (A6J48_08625) pilE 1480503..1480934 (-) 432 WP_002249229.1 pilin Machinery gene
  A6J48_RS08750 (A6J48_08665) katA 1482287..1483801 (-) 1515 WP_002218620.1 catalase KatA -
  A6J48_RS08755 (A6J48_08670) - 1484149..1485000 (+) 852 WP_002245813.1 RNA polymerase sigma-54 factor -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 15059.42 Da        Isoelectric Point: 9.3697

>NTDB_id=222630 A6J48_RS08725 WP_002249229.1 1480503..1480934(-) (pilE) [Neisseria meningitidis strain FDAARGOS_209]
MKAIQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQMSEALTLAEGQKTAVVEYYSDKGTFPKNNASAGIASASEIT
GKYVAKVEVSGATITSTMKTQGVNKDISGATLVLEGKQNSGSFEWTCKAGSVKAKFLPSICRQ

Nucleotide


Download         Length: 432 bp        

>NTDB_id=222630 A6J48_RS08725 WP_002249229.1 1480503..1480934(-) (pilE) [Neisseria meningitidis strain FDAARGOS_209]
ATGAAAGCAATCCAAAAAGGTTTCACTCTGATCGAGCTGATGATCGTCATCGCCATCGTCGGTATCTTGGCAGCCGTCGC
CCTGCCCGCATACCAAGACTACACCGCGCGCGCCCAAATGTCCGAAGCCCTGACTTTGGCCGAAGGTCAAAAAACCGCAG
TGGTCGAGTATTATTCCGACAAAGGCACATTCCCGAAAAACAATGCTTCCGCAGGTATTGCCAGTGCTTCTGAGATTACA
GGTAAGTATGTGGCTAAGGTAGAAGTTTCGGGTGCTACCATTACTTCTACAATGAAAACTCAGGGTGTAAACAAAGACAT
CAGCGGCGCAACCTTGGTACTGGAAGGCAAACAAAACTCAGGCTCGTTCGAGTGGACTTGTAAAGCAGGTTCTGTAAAAG
CAAAATTCTTGCCATCTATCTGCCGCCAATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-142)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

57.233

100

0.636
  pilE Neisseria gonorrhoeae MS11

56.25

100

0.629
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

36.17

100

0.476
  pilA/pilA1 Eikenella corrodens VA1

41.401

100

0.455
  comP Acinetobacter baylyi ADP1

42.953

100

0.448
  pilA Ralstonia pseudosolanacearum GMI1000

36.905

100

0.434
  pilA2 Legionella pneumophila str. Paris

43.165

97.203

0.42
  pilA2 Legionella pneumophila strain ERS1305867

43.165

97.203

0.42
  pilA Acinetobacter baumannii strain A118

39.716

98.601

0.392
  pilA/pilAI Pseudomonas stutzeri DSM 10701

37.063

100

0.371

Multiple sequence alignment