Detailed information
Bioinformatically predicted
Overview
| Name | pilJ | Type | Machinery gene |
| Locus tag | A6J43_RS08290 | Genome accession | NZ_CP020415 |
| Coordinates | 1423957..1424919 (-) | Length | 320 a.a. |
| NCBI ID | WP_082277595.1 | Uniprot ID | - |
| Organism | Neisseria gonorrhoeae strain FDAARGOS_204 | ||
| Function | type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1384244..1437871 | 1423957..1424919 | within | 0 |
Gene organization within MGE regions
Location: 1384244..1437871
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6J43_RS08005 (A6J43_08040) | - | 1384244..1385089 (+) | 846 | WP_003701197.1 | Bro-N domain-containing protein | - |
| A6J43_RS08010 (A6J43_08045) | - | 1385126..1385275 (-) | 150 | WP_003706419.1 | hypothetical protein | - |
| A6J43_RS08015 (A6J43_08050) | - | 1385278..1385952 (-) | 675 | WP_003687998.1 | hypothetical protein | - |
| A6J43_RS08020 (A6J43_08055) | - | 1385949..1386434 (-) | 486 | WP_003687997.1 | hypothetical protein | - |
| A6J43_RS08025 (A6J43_08060) | - | 1386440..1386913 (-) | 474 | WP_003687996.1 | hypothetical protein | - |
| A6J43_RS08030 (A6J43_08065) | - | 1386968..1388263 (-) | 1296 | WP_003695011.1 | DUF4043 family protein | - |
| A6J43_RS08035 (A6J43_08070) | - | 1388284..1389021 (-) | 738 | WP_225577423.1 | hypothetical protein | - |
| A6J43_RS14680 (A6J43_08075) | - | 1388946..1396197 (-) | 7252 | Protein_1395 | PLxRFG domain-containing protein | - |
| A6J43_RS08050 (A6J43_08085) | - | 1396194..1397390 (-) | 1197 | WP_003693452.1 | hypothetical protein | - |
| A6J43_RS08055 (A6J43_08090) | - | 1397628..1399895 (-) | 2268 | WP_225577699.1 | hypothetical protein | - |
| A6J43_RS08060 (A6J43_08095) | - | 1399880..1401154 (-) | 1275 | WP_047919159.1 | PBSX family phage terminase large subunit | - |
| A6J43_RS14200 | - | 1401135..1401674 (-) | 540 | WP_003690920.1 | hypothetical protein | - |
| A6J43_RS08075 (A6J43_08110) | - | 1401674..1402096 (-) | 423 | WP_003690919.1 | hypothetical protein | - |
| A6J43_RS08080 (A6J43_08115) | - | 1402161..1402679 (-) | 519 | WP_033910742.1 | HNH endonuclease | - |
| A6J43_RS08085 (A6J43_08120) | - | 1402670..1403053 (-) | 384 | WP_003690918.1 | recombination protein NinB | - |
| A6J43_RS08090 (A6J43_08125) | - | 1403050..1403355 (-) | 306 | WP_003687981.1 | nuclease domain-containing protein | - |
| A6J43_RS08095 (A6J43_08130) | - | 1403348..1404058 (-) | 711 | WP_226882444.1 | RusA family crossover junction endodeoxyribonuclease | - |
| A6J43_RS08100 (A6J43_08135) | - | 1404087..1404236 (-) | 150 | WP_003692854.1 | hypothetical protein | - |
| A6J43_RS08110 (A6J43_08145) | - | 1404621..1405115 (-) | 495 | WP_003692852.1 | DUF3310 domain-containing protein | - |
| A6J43_RS08115 (A6J43_08150) | - | 1405129..1405380 (-) | 252 | WP_003693465.1 | hypothetical protein | - |
| A6J43_RS08120 (A6J43_08155) | - | 1405397..1406758 (-) | 1362 | WP_003689132.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| A6J43_RS08125 (A6J43_08160) | - | 1406755..1407819 (-) | 1065 | WP_003693470.1 | hypothetical protein | - |
| A6J43_RS08130 (A6J43_08165) | - | 1407937..1408164 (-) | 228 | WP_003698261.1 | helix-turn-helix domain-containing protein | - |
| A6J43_RS08135 (A6J43_08170) | - | 1408337..1408525 (+) | 189 | WP_010951308.1 | hypothetical protein | - |
| A6J43_RS08140 (A6J43_08175) | - | 1408502..1408657 (-) | 156 | WP_003698902.1 | hypothetical protein | - |
| A6J43_RS08145 (A6J43_08180) | - | 1408737..1408967 (-) | 231 | WP_020997318.1 | Cro/CI family transcriptional regulator | - |
| A6J43_RS08150 (A6J43_08185) | - | 1409096..1409758 (+) | 663 | WP_012503489.1 | LexA family transcriptional regulator | - |
| A6J43_RS08155 (A6J43_08190) | - | 1409871..1410308 (+) | 438 | WP_003687967.1 | hypothetical protein | - |
| A6J43_RS08160 (A6J43_08195) | - | 1410325..1410786 (+) | 462 | WP_003687965.1 | helix-turn-helix domain-containing protein | - |
| A6J43_RS08165 (A6J43_08200) | - | 1410783..1411196 (+) | 414 | WP_003687963.1 | hypothetical protein | - |
| A6J43_RS08170 (A6J43_08205) | - | 1411394..1411594 (+) | 201 | WP_003692842.1 | hypothetical protein | - |
| A6J43_RS08175 (A6J43_08210) | - | 1411627..1412103 (+) | 477 | WP_002255718.1 | DUF6948 domain-containing protein | - |
| A6J43_RS08180 (A6J43_08215) | - | 1412100..1412309 (+) | 210 | WP_082277588.1 | hypothetical protein | - |
| A6J43_RS08185 (A6J43_08220) | - | 1412449..1412781 (+) | 333 | WP_105183567.1 | hypothetical protein | - |
| A6J43_RS08190 (A6J43_08225) | - | 1412934..1413209 (+) | 276 | WP_003694990.1 | NGO1622 family putative holin | - |
| A6J43_RS08195 (A6J43_08230) | - | 1413206..1413367 (+) | 162 | WP_003693867.1 | hypothetical protein | - |
| A6J43_RS08200 (A6J43_08235) | - | 1413436..1414122 (+) | 687 | WP_033910330.1 | phage replication initiation protein, NGO0469 family | - |
| A6J43_RS08205 (A6J43_08240) | - | 1414262..1414444 (+) | 183 | WP_003691535.1 | hypothetical protein | - |
| A6J43_RS08210 (A6J43_08245) | - | 1414441..1414932 (+) | 492 | WP_082277471.1 | siphovirus Gp157 family protein | - |
| A6J43_RS14585 | - | 1415231..1415497 (+) | 267 | Protein_1427 | hypothetical protein | - |
| A6J43_RS08225 (A6J43_08260) | - | 1415778..1416461 (+) | 684 | WP_003687929.1 | DUF2786 domain-containing protein | - |
| A6J43_RS08230 (A6J43_08265) | - | 1416656..1416925 (+) | 270 | WP_003687928.1 | hypothetical protein | - |
| A6J43_RS08235 (A6J43_08270) | - | 1416987..1417196 (+) | 210 | WP_047919504.1 | lactate dehydrogenase | - |
| A6J43_RS08240 (A6J43_08275) | - | 1417283..1418476 (-) | 1194 | WP_017146746.1 | phage integrase central domain-containing protein | - |
| A6J43_RS08255 (A6J43_08290) | yaaA | 1419006..1419785 (-) | 780 | WP_003692836.1 | peroxide stress protein YaaA | - |
| A6J43_RS08260 (A6J43_08295) | dapC | 1419941..1421128 (-) | 1188 | WP_082277589.1 | succinyldiaminopimelate transaminase | - |
| A6J43_RS08265 (A6J43_08300) | dut | 1421206..1421658 (-) | 453 | WP_003702446.1 | dUTP diphosphatase | - |
| A6J43_RS13440 | - | 1421824..1422532 (+) | 709 | Protein_1435 | AzlC family ABC transporter permease | - |
| A6J43_RS08275 (A6J43_08310) | - | 1422529..1422837 (+) | 309 | WP_050170999.1 | AzlD family protein | - |
| A6J43_RS08280 (A6J43_08315) | pilL | 1422907..1423380 (-) | 474 | WP_192941126.1 | PilX family type IV pilin | Machinery gene |
| A6J43_RS08285 (A6J43_08320) | pilK | 1423382..1423978 (-) | 597 | WP_082277593.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
| A6J43_RS08290 (A6J43_08325) | pilJ | 1423957..1424919 (-) | 963 | WP_082277595.1 | PilW family protein | Machinery gene |
| A6J43_RS08295 (A6J43_08330) | pilI | 1424916..1425524 (-) | 609 | WP_082277597.1 | type IV pilus modification protein PilV | Machinery gene |
| A6J43_RS08300 (A6J43_08335) | pilH | 1425556..1426221 (-) | 666 | WP_050170995.1 | Tfp pilus assembly protein FimT/FimU | Machinery gene |
| A6J43_RS08310 (A6J43_08340) | dnaB | 1426529..1427935 (-) | 1407 | WP_047920816.1 | replicative DNA helicase | - |
| A6J43_RS08315 (A6J43_08350) | - | 1428098..1428679 (+) | 582 | WP_003698180.1 | superoxide dismutase | - |
| A6J43_RS08325 (A6J43_08360) | - | 1428909..1429418 (-) | 510 | WP_003687909.1 | isoprenylcysteine carboxyl methyltransferase family protein | - |
| A6J43_RS08330 (A6J43_08365) | - | 1429745..1430077 (-) | 333 | WP_003687908.1 | hypothetical protein | - |
| A6J43_RS08335 (A6J43_08370) | cysT | 1430263..1431101 (+) | 839 | Protein_1446 | sulfate ABC transporter permease subunit CysT | - |
| A6J43_RS08340 (A6J43_08375) | cysW | 1431290..1432150 (+) | 861 | WP_047918975.1 | sulfate ABC transporter permease subunit CysW | - |
| A6J43_RS08345 (A6J43_08380) | - | 1432147..1433223 (+) | 1077 | WP_003687905.1 | sulfate/molybdate ABC transporter ATP-binding protein | - |
| A6J43_RS08350 (A6J43_08385) | ilvA | 1433279..1434805 (-) | 1527 | WP_003690890.1 | threonine ammonia-lyase, biosynthetic | - |
| A6J43_RS08355 (A6J43_08390) | - | 1434954..1436123 (+) | 1170 | WP_003687902.1 | D-alanyl-D-alanine carboxypeptidase family protein | - |
| A6J43_RS08360 (A6J43_08395) | - | 1436249..1436821 (-) | 573 | WP_003687901.1 | 50S ribosomal protein L25/general stress protein Ctc | - |
| A6J43_RS08365 (A6J43_08400) | - | 1436888..1437871 (-) | 984 | WP_003687900.1 | ribose-phosphate pyrophosphokinase | - |
Sequence
Protein
Download Length: 320 a.a. Molecular weight: 35332.14 Da Isoelectric Point: 8.9759
>NTDB_id=222486 A6J43_RS08290 WP_082277595.1 1423957..1424919(-) (pilJ) [Neisseria gonorrhoeae strain FDAARGOS_204]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAEQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVVSDVAQKNRLFSLKMNSTNKVISNGTDNKLIPIAESPNIRYQGFTHRPNALIFQYGIDDVNASADTTV
VSSCAAISKPGKQILNLEDVKKELQIVSQDKEQNGNIARQRHVVNAYAVGRFGNEEGLFRFQLNEKGEWGNPQLLAKKIK
RMRVRYIYVSGCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGGSDAKIAASSDNIIYAYRINATIRGGNVCANRTL
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAEQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVVSDVAQKNRLFSLKMNSTNKVISNGTDNKLIPIAESPNIRYQGFTHRPNALIFQYGIDDVNASADTTV
VSSCAAISKPGKQILNLEDVKKELQIVSQDKEQNGNIARQRHVVNAYAVGRFGNEEGLFRFQLNEKGEWGNPQLLAKKIK
RMRVRYIYVSGCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGGSDAKIAASSDNIIYAYRINATIRGGNVCANRTL
Nucleotide
Download Length: 963 bp
>NTDB_id=222486 A6J43_RS08290 WP_082277595.1 1423957..1424919(-) (pilJ) [Neisseria gonorrhoeae strain FDAARGOS_204]
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTGTTTCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAAT
GAACAGTACAAATAAAGTTATCTCCAACGGTACAGATAATAAACTTATCCCCATAGCGGAATCTCCAAATATCAGATATC
AGGGTTTTACCCATCGCCCTAACGCATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTC
GTCAGCAGCTGTGCCGCAATATCGAAACCGGGCAAGCAAATCCTTAATTTAGAAGATGTAAAAAAAGAATTGCAGATTGT
GAGTCAGGATAAGGAGCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGTTTGGCA
ATGAGGAAGGTTTGTTCCGCTTCCAATTGAATGAAAAGGGCGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAAA
CGTATGAGAGTGCGGTATATCTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATAC
GGATAAATTCGACAGCTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGCGGTAGTGATGCCAAGATTGCCG
CTTCTTCAGATAATATTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTT
TGA
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTGTTTCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAAT
GAACAGTACAAATAAAGTTATCTCCAACGGTACAGATAATAAACTTATCCCCATAGCGGAATCTCCAAATATCAGATATC
AGGGTTTTACCCATCGCCCTAACGCATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTC
GTCAGCAGCTGTGCCGCAATATCGAAACCGGGCAAGCAAATCCTTAATTTAGAAGATGTAAAAAAAGAATTGCAGATTGT
GAGTCAGGATAAGGAGCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGTTTGGCA
ATGAGGAAGGTTTGTTCCGCTTCCAATTGAATGAAAAGGGCGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAAA
CGTATGAGAGTGCGGTATATCTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATAC
GGATAAATTCGACAGCTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGCGGTAGTGATGCCAAGATTGCCG
CTTCTTCAGATAATATTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTT
TGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilJ | Neisseria gonorrhoeae MS11 |
87.188 |
100 |
0.872 |