Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   C2H93_RS00685 Genome accession   NZ_CP026036
Coordinates   151939..152373 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain PK5_16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 146939..157373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H93_RS00655 (C2H93_00640) ydaD 147583..148443 (+) 861 WP_003234401.1 SDR family oxidoreductase -
  C2H93_RS00660 (C2H93_00645) lyxE 148459..148962 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  C2H93_RS00665 (C2H93_00650) ydaF 149049..149600 (+) 552 WP_003234398.1 GNAT family protein -
  C2H93_RS00670 (C2H93_00655) ydaG 149678..150100 (+) 423 WP_014475844.1 pyridoxamine 5'-phosphate oxidase family protein -
  C2H93_RS00675 (C2H93_00660) amj 150608..151417 (+) 810 WP_015715258.1 lipid II flippase Amj -
  C2H93_RS00680 (C2H93_00665) ydzA 151464..151754 (-) 291 WP_014475846.1 DUF3817 domain-containing protein -
  C2H93_RS00685 (C2H93_00670) lrpC 151939..152373 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  C2H93_RS00690 (C2H93_00675) topB 152438..154621 (+) 2184 WP_038827751.1 DNA topoisomerase III -
  C2H93_RS00695 (C2H93_00680) epsJ 154824..155912 (+) 1089 WP_064671960.1 hypothetical protein -
  C2H93_RS00700 (C2H93_00685) epsK 155893..156744 (+) 852 WP_249852517.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=222447 C2H93_RS00685 WP_003246585.1 151939..152373(+) (lrpC) [Bacillus subtilis strain PK5_16]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=222447 C2H93_RS00685 WP_003246585.1 151939..152373(+) (lrpC) [Bacillus subtilis strain PK5_16]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGGCAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTAGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTATGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1