Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   C2H94_RS00870 Genome accession   NZ_CP026034
Coordinates   142789..144279 (-) Length   496 a.a.
NCBI ID   WP_038828563.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_52     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 137789..149279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H94_RS00840 (C2H94_00830) gudB 137926..139200 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  C2H94_RS00845 (C2H94_00835) mecB 139357..139941 (-) 585 WP_003230533.1 genetic competence negative regulator -
  C2H94_RS00850 (C2H94_00840) ypbG 140100..140879 (-) 780 WP_003230532.1 metallophosphoesterase -
  C2H94_RS00855 (C2H94_00845) ypbF 140967..141410 (-) 444 WP_003230531.1 YpbF family protein -
  C2H94_RS00860 (C2H94_00850) ypbE 141473..142209 (-) 737 Protein_170 LysM peptidoglycan-binding domain-containing protein -
  C2H94_RS00865 (C2H94_00855) ypbD 142160..142762 (-) 603 WP_038828565.1 CPBP family intramembrane glutamic endopeptidase -
  C2H94_RS00870 (C2H94_00860) recS 142789..144279 (-) 1491 WP_038828563.1 ATP-dependent DNA helicase RecQ Machinery gene
  C2H94_RS00875 (C2H94_00865) gmmB 144272..145330 (-) 1059 WP_014477210.1 helix-turn-helix domain-containing protein -
  C2H94_RS00880 (C2H94_00870) fer 145596..145844 (+) 249 WP_003225461.1 ferredoxin -
  C2H94_RS00885 (C2H94_00875) fmnP 145884..146456 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  C2H94_RS00890 (C2H94_00880) serA 146953..148530 (+) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56562.11 Da        Isoelectric Point: 6.3928

>NTDB_id=222138 C2H94_RS00870 WP_038828563.1 142789..144279(-) (recS) [Bacillus subtilis strain PK5_52]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSYCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFNLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=222138 C2H94_RS00870 WP_038828563.1 142789..144279(-) (recS) [Bacillus subtilis strain PK5_52]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTCAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCGCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGACACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTCGA
GCTGCAGCATGCTGTACGGCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGCCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCTGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCTGATATCAGATATGTAATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGAAGAGCG
GGCCGCGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTGATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTTC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTACTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCATATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAACTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.395

100

0.994

Multiple sequence alignment