Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   BS11774_RS14165 Genome accession   NZ_CP026010
Coordinates   2677459..2677908 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain ATCC 11774     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2672459..2682908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS11774_RS14125 (BS11774_14055) ctaE 2672476..2673099 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  BS11774_RS14130 (BS11774_14060) ctaF 2673102..2673434 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  BS11774_RS14135 (BS11774_14065) ctaG 2673462..2674355 (+) 894 WP_024573214.1 cytochrome c oxidase assembly factor CtaG -
  BS11774_RS14140 (BS11774_14070) ylbA 2674387..2674749 (-) 363 WP_003232238.1 YugN family protein -
  BS11774_RS14145 (BS11774_14075) ylbB 2674889..2675335 (+) 447 WP_003221362.1 CBS domain-containing protein -
  BS11774_RS14150 (BS11774_14080) ylbC 2675419..2676459 (+) 1041 WP_041335865.1 CAP domain-containing protein -
  BS11774_RS14155 (BS11774_14085) ylbD 2676690..2677088 (+) 399 WP_003232233.1 YlbD family protein -
  BS11774_RS14160 (BS11774_14090) ylbE 2677104..2677343 (+) 240 WP_003232231.1 YlbE-like family protein -
  BS11774_RS14165 (BS11774_14095) ylbF 2677459..2677908 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  BS11774_RS14170 (BS11774_14100) ylbG 2677963..2678235 (+) 273 WP_015715839.1 YlbG family protein -
  BS11774_RS14175 (BS11774_14105) rsmD 2678558..2679112 (+) 555 WP_017694816.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  BS11774_RS14180 (BS11774_14110) coaD 2679117..2679602 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  BS11774_RS14185 (BS11774_14115) spoVV 2679613..2680839 (-) 1227 WP_128473886.1 dipicolinic acid transporter SpoVV -
  BS11774_RS14190 (BS11774_14120) ylbK 2681020..2681802 (+) 783 WP_128473887.1 patatin family protein -
  BS11774_RS14195 (BS11774_14125) sepM 2681804..2682829 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=221685 BS11774_RS14165 WP_003221370.1 2677459..2677908(+) (ylbF) [Bacillus subtilis strain ATCC 11774]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=221685 BS11774_RS14165 WP_003221370.1 2677459..2677908(+) (ylbF) [Bacillus subtilis strain ATCC 11774]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTCGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment