Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   BLMD_RS14825 Genome accession   NZ_CP020352
Coordinates   2956139..2958487 (-) Length   782 a.a.
NCBI ID   WP_080131458.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain MDJK30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2951139..2963487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLMD_RS14805 (BLMD_14805) - 2951182..2952753 (+) 1572 WP_020452408.1 SH3 domain-containing protein -
  BLMD_RS14810 (BLMD_14810) dtd 2952781..2953224 (-) 444 WP_020452409.1 D-aminoacyl-tRNA deacylase -
  BLMD_RS14815 (BLMD_14815) - 2953238..2955439 (-) 2202 WP_020452410.1 RelA/SpoT family protein -
  BLMD_RS14820 (BLMD_14820) - 2955609..2956121 (-) 513 WP_020452411.1 adenine phosphoribosyltransferase -
  BLMD_RS14825 (BLMD_14825) recJ 2956139..2958487 (-) 2349 WP_080131458.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  BLMD_RS14830 (BLMD_14830) - 2958559..2958852 (-) 294 WP_020452413.1 lipopolysaccharide assembly LapA domain-containing protein -
  BLMD_RS14835 (BLMD_14835) secDF 2959006..2961231 (-) 2226 WP_080131459.1 protein translocase subunit SecDF -
  BLMD_RS14840 (BLMD_14840) - 2961268..2961564 (-) 297 WP_023855396.1 post-transcriptional regulator -
  BLMD_RS14845 (BLMD_14845) spoVB 2961682..2963235 (+) 1554 WP_026579144.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 782 a.a.        Molecular weight: 87534.14 Da        Isoelectric Point: 4.8548

>NTDB_id=221650 BLMD_RS14825 WP_080131458.1 2956139..2958487(-) (recJ) [Bacillus paralicheniformis strain MDJK30]
MLASKMRWDVQTPDKEKVEQLAGRLGITPLAASLLVMRGYDTADKASSFLNGKDAVFHDPYLLKDMEKAVQRIKQAISDQ
EKIMIYGDYDADGVTSTTVLLQMLKKCSAQADFYIPDRFKEGYGPNEAAFRGIKESGYSLIITVDTGIAAVHEAEVAKEL
GVDLIITDHHEPGPVLPDAYAIIHPKQPGCGYPFKELAGVGVAFKLAHALNGELPEDLLDLCAIGTIADLVPLHDENRQI
AKRGMEQFRRTKRPGLKALTKIAGAEIHSADEETIGFQIAPRLNAVGRIEQADPAVYLLNTEDETEAEELAEDINALNKE
RQKIVNQMTEEAVQMIEEEGLDQPVIVAARPGWNPGVVGIVASKLVERYYRPAIVLGIDEEKGIAKGSARSIKGFDLFQN
LSECRDILPHFGGHPMAAGMTLNLEDVSALRERINRQAEAVLTEEDFIPVQDVDLCCRLEDITVDSIAEMNMLAPFGTGN
PKPFVLVSDVKIDDSRKIGANKNHLKLVLADGENKLDCIGFYKGAIEDGIVPGAKISIVGELSINEWNNRKKPQLMIKDA
AVNEWQLFDLRGKRSWEEKILQLDPAKRACICFREETKAKLAGTGLEEELTVISGPEEAERLDLESRSAVFIDIPPSLDI
FDQVIKGKKLERIYLIFYQSDEHFFSTFPTREYFKWYYAFLLKRGSFDLPKYGGELARHKGWTKDTIDFMTKVFFELGFV
TIENGVLSVVYHAERRDLTDSETYREKQRLIELEQKLIYSSAGELKQWLDKRMAENAVAYKV

Nucleotide


Download         Length: 2349 bp        

>NTDB_id=221650 BLMD_RS14825 WP_080131458.1 2956139..2958487(-) (recJ) [Bacillus paralicheniformis strain MDJK30]
ATGTTAGCGTCAAAAATGCGTTGGGACGTGCAAACGCCCGACAAAGAAAAGGTGGAGCAGCTCGCCGGAAGATTAGGCAT
TACTCCCCTTGCCGCCTCATTGCTTGTCATGAGAGGTTACGATACAGCCGACAAAGCATCTTCATTTTTAAATGGCAAGG
ATGCTGTTTTTCACGATCCTTATCTGCTGAAAGATATGGAAAAAGCTGTACAGAGAATCAAACAGGCAATTTCAGATCAA
GAAAAGATTATGATTTACGGCGATTATGATGCGGACGGTGTGACAAGCACGACTGTCCTTTTGCAAATGTTGAAAAAATG
TTCAGCACAAGCCGATTTTTATATACCTGACCGCTTTAAAGAAGGGTACGGCCCGAATGAAGCGGCCTTTCGCGGGATCA
AAGAATCAGGCTATTCATTGATCATCACAGTTGACACAGGCATTGCCGCCGTTCATGAAGCTGAAGTCGCTAAAGAGCTT
GGCGTCGATTTGATCATTACGGATCACCATGAGCCGGGCCCCGTTTTGCCGGATGCCTATGCGATCATTCATCCGAAGCA
GCCGGGCTGCGGCTATCCATTTAAAGAGCTAGCCGGCGTCGGTGTCGCATTTAAGCTAGCCCACGCTTTGAACGGAGAGC
TCCCGGAAGATTTGCTCGACCTTTGTGCGATCGGCACGATTGCCGACCTTGTGCCGCTCCATGATGAAAACAGGCAGATT
GCCAAGCGCGGCATGGAACAGTTCAGGAGGACGAAGCGCCCCGGATTAAAGGCGCTGACCAAAATTGCCGGAGCGGAGAT
ACATAGTGCGGATGAAGAGACCATCGGTTTTCAAATCGCGCCCCGCTTAAACGCGGTCGGCAGAATTGAACAGGCTGACC
CGGCCGTCTACCTCCTGAACACAGAAGACGAAACAGAAGCAGAAGAGCTGGCCGAAGACATCAACGCCTTGAACAAGGAG
CGCCAAAAAATCGTCAATCAGATGACAGAGGAAGCCGTTCAGATGATCGAGGAGGAAGGCCTTGACCAGCCGGTGATCGT
CGCGGCGCGGCCGGGCTGGAATCCCGGCGTCGTCGGAATCGTGGCTTCAAAGCTTGTCGAGAGGTATTACAGGCCAGCCA
TCGTTCTCGGTATCGATGAAGAAAAAGGCATTGCCAAAGGATCTGCGCGCAGCATCAAAGGATTTGATTTATTTCAAAAT
CTCTCGGAGTGCCGGGATATTCTCCCGCACTTCGGCGGGCACCCGATGGCAGCCGGAATGACGCTCAACCTGGAAGATGT
TTCGGCACTAAGGGAGAGAATCAACCGTCAGGCTGAAGCGGTTCTGACCGAGGAAGATTTTATTCCCGTCCAAGACGTCG
ATTTGTGCTGCCGGCTCGAAGATATCACGGTTGACAGCATTGCCGAAATGAACATGCTGGCGCCGTTCGGCACGGGAAAT
CCGAAGCCGTTCGTTCTTGTCAGCGACGTTAAAATTGATGATTCCAGGAAAATCGGCGCCAACAAGAATCACTTGAAGCT
TGTCCTGGCAGACGGCGAGAACAAGCTCGATTGCATCGGATTTTATAAAGGCGCCATCGAAGACGGGATCGTTCCTGGAG
CAAAGATTTCGATTGTCGGGGAACTGTCGATTAACGAGTGGAACAACAGAAAAAAACCGCAGCTGATGATCAAAGATGCG
GCCGTCAATGAATGGCAGCTGTTTGATCTGCGGGGAAAACGGTCATGGGAAGAAAAAATATTGCAGCTGGACCCTGCAAA
ACGGGCGTGCATCTGCTTCCGCGAGGAAACAAAAGCGAAGCTTGCGGGGACAGGCCTTGAAGAAGAGCTGACCGTCATCA
GCGGCCCTGAAGAGGCAGAGCGTCTCGACCTTGAGAGCCGCTCTGCGGTATTTATAGATATTCCGCCGTCGCTCGACATC
TTTGACCAAGTGATAAAAGGCAAAAAACTGGAGCGCATTTATCTGATTTTTTATCAATCAGATGAACATTTTTTCTCAAC
ATTTCCAACAAGGGAATACTTTAAATGGTACTATGCTTTCCTCCTGAAAAGAGGTTCTTTTGACTTGCCGAAATACGGCG
GGGAGCTTGCCAGACATAAAGGCTGGACAAAAGACACAATTGATTTCATGACAAAGGTGTTTTTTGAGCTCGGTTTTGTT
ACAATAGAGAATGGTGTTTTATCTGTTGTTTATCATGCCGAAAGGCGCGATCTGACAGATTCTGAAACCTACCGGGAAAA
ACAGCGCCTGATTGAATTGGAGCAAAAGCTCATTTATTCTTCGGCGGGTGAGCTTAAACAGTGGCTGGATAAGCGGATGG
CGGAAAACGCCGTCGCTTATAAAGTATGA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHHA1 domain (DHHA1)

(315-436)

RecJ OB domain (RecJ_OB)

(453-559)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

69.014

99.872

0.689

Multiple sequence alignment