Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   BS21228_RS18090 Genome accession   NZ_CP020023
Coordinates   3398028..3398606 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain ATCC 21228     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3393028..3403606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS21228_RS18070 (BS21228_18005) hemAT 3393548..3394846 (-) 1299 WP_014479367.1 heme-based aerotactic transducer HemAT -
  BS21228_RS18075 (BS21228_18010) comW 3394985..3396513 (-) 1529 Protein_3502 FAD-dependent oxidoreductase -
  BS21228_RS18080 (BS21228_18015) yhxC 3396617..3397474 (+) 858 WP_014479371.1 SDR family oxidoreductase -
  BS21228_RS18085 (BS21228_18020) yhzC 3397502..3397735 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  BS21228_RS18090 (BS21228_18025) comK 3398028..3398606 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  BS21228_RS18095 (BS21228_18030) yhxD 3398651..3399550 (-) 900 WP_014479372.1 SDR family oxidoreductase -
  BS21228_RS18100 (BS21228_18035) yhjA 3399767..3400036 (+) 270 WP_014479373.1 excalibur calcium-binding domain-containing protein -
  BS21228_RS18105 (BS21228_18040) yhjB 3400080..3401549 (-) 1470 WP_014479374.1 sodium:solute symporter -
  BS21228_RS18110 (BS21228_18045) yhjC 3401546..3401746 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  BS21228_RS18115 (BS21228_18050) - 3401945..3402316 (-) 372 WP_014476361.1 hypothetical protein -
  BS21228_RS18120 (BS21228_18055) yhjE 3402468..3403091 (+) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  BS21228_RS18125 (BS21228_18060) lepB 3403093..3403599 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=220358 BS21228_RS18090 WP_003245329.1 3398028..3398606(+) (comK) [Bacillus subtilis strain ATCC 21228]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=220358 BS21228_RS18090 WP_003245329.1 3398028..3398606(+) (comK) [Bacillus subtilis strain ATCC 21228]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment