Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | B1772_RS00265 | Genome accession | NZ_CP019999 |
| Coordinates | 52745..54139 (+) | Length | 464 a.a. |
| NCBI ID | WP_011308691.1 | Uniprot ID | A0A916NU34 |
| Organism | Dehalococcoides mccartyi strain KBTCE1 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 53323..99873 | 52745..54139 | flank | -816 |
Gene organization within MGE regions
Location: 52745..99873
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B1772_RS00265 (B1772_00265) | radA | 52745..54139 (+) | 1395 | WP_011308691.1 | DNA repair protein RadA | Machinery gene |
| B1772_RS00270 (B1772_00270) | - | 54126..54809 (+) | 684 | WP_078986731.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| B1772_RS00275 (B1772_00275) | ispF | 54815..55288 (+) | 474 | WP_011928579.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| B1772_RS00280 (B1772_00280) | cysS | 55292..56665 (+) | 1374 | WP_078986732.1 | cysteine--tRNA ligase | - |
| B1772_RS00285 (B1772_00285) | - | 56825..57784 (+) | 960 | WP_228384443.1 | tyrosine-type recombinase/integrase | - |
| B1772_RS00290 (B1772_00290) | - | 57996..58517 (+) | 522 | WP_078986733.1 | NYN domain-containing protein | - |
| B1772_RS00295 (B1772_00295) | - | 58651..59808 (-) | 1158 | WP_078986734.1 | hypothetical protein | - |
| B1772_RS07515 | - | 60021..60176 (-) | 156 | WP_154021692.1 | hypothetical protein | - |
| B1772_RS00300 (B1772_00300) | - | 60369..60914 (-) | 546 | WP_011928608.1 | AAA family ATPase | - |
| B1772_RS00305 (B1772_00305) | - | 60918..61244 (-) | 327 | WP_011928609.1 | hypothetical protein | - |
| B1772_RS00310 (B1772_00310) | - | 61245..61823 (-) | 579 | WP_078986735.1 | hypothetical protein | - |
| B1772_RS00315 (B1772_00315) | - | 61816..62046 (-) | 231 | WP_042377457.1 | hypothetical protein | - |
| B1772_RS00320 (B1772_00320) | - | 62046..62342 (-) | 297 | WP_058316897.1 | hypothetical protein | - |
| B1772_RS00325 (B1772_00325) | - | 62342..63934 (-) | 1593 | WP_078986736.1 | hypothetical protein | - |
| B1772_RS00330 (B1772_00330) | - | 64011..64346 (-) | 336 | WP_011928612.1 | hypothetical protein | - |
| B1772_RS00335 (B1772_00335) | - | 64402..64794 (-) | 393 | WP_011928613.1 | single-stranded DNA-binding protein | - |
| B1772_RS00340 (B1772_00340) | - | 64835..65077 (-) | 243 | WP_153300901.1 | hypothetical protein | - |
| B1772_RS00345 (B1772_00345) | - | 65258..65890 (+) | 633 | WP_078986738.1 | LexA family transcriptional regulator | - |
| B1772_RS00350 (B1772_00350) | - | 66041..66523 (+) | 483 | WP_078986739.1 | hypothetical protein | - |
| B1772_RS00355 (B1772_00355) | - | 66547..67320 (+) | 774 | WP_058316892.1 | hypothetical protein | - |
| B1772_RS00360 (B1772_00360) | - | 67442..67780 (+) | 339 | WP_058316891.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| B1772_RS00365 (B1772_00365) | - | 67773..68870 (+) | 1098 | WP_058316890.1 | HigA family addiction module antitoxin | - |
| B1772_RS00370 (B1772_00370) | - | 69434..69742 (-) | 309 | WP_011308733.1 | ferritin family protein | - |
| B1772_RS00375 (B1772_00375) | - | 69931..71076 (-) | 1146 | WP_061977017.1 | NTP transferase domain-containing protein | - |
| B1772_RS00380 (B1772_00380) | - | 71077..71766 (-) | 690 | WP_078986740.1 | hypothetical protein | - |
| B1772_RS00385 (B1772_00385) | - | 71789..75001 (-) | 3213 | WP_078986741.1 | molybdopterin-dependent oxidoreductase | - |
| B1772_RS00390 (B1772_00390) | nrfD | 74994..76175 (-) | 1182 | WP_078986742.1 | NrfD/PsrC family molybdoenzyme membrane anchor subunit | - |
| B1772_RS00395 (B1772_00395) | - | 76196..77134 (-) | 939 | WP_011308738.1 | 4Fe-4S dicluster domain-containing protein | - |
| B1772_RS00400 (B1772_00400) | - | 77615..78601 (+) | 987 | WP_011308739.1 | Mrp/NBP35 family ATP-binding protein | - |
| B1772_RS00405 (B1772_00405) | - | 78719..79084 (-) | 366 | WP_011308740.1 | hypothetical protein | - |
| B1772_RS00410 (B1772_00410) | - | 79230..80069 (-) | 840 | WP_011308741.1 | DegV family protein | - |
| B1772_RS00415 (B1772_00415) | - | 80268..81572 (+) | 1305 | WP_012984070.1 | LemA family protein | - |
| B1772_RS00420 (B1772_00420) | - | 81635..83554 (+) | 1920 | WP_078987057.1 | endonuclease/exonuclease/phosphatase family protein | - |
| B1772_RS00425 (B1772_00425) | - | 83622..84104 (-) | 483 | WP_011308744.1 | HyaD/HybD family hydrogenase maturation endopeptidase | - |
| B1772_RS00430 (B1772_00430) | - | 84107..85687 (-) | 1581 | WP_077997826.1 | nickel-dependent hydrogenase large subunit | - |
| B1772_RS00435 (B1772_00435) | - | 85718..86782 (-) | 1065 | WP_011308746.1 | hydrogenase small subunit | - |
| B1772_RS00440 (B1772_00440) | - | 86835..87638 (-) | 804 | WP_011308747.1 | 4Fe-4S dicluster domain-containing protein | - |
| B1772_RS00445 (B1772_00445) | - | 88316..89389 (-) | 1074 | WP_011308748.1 | ABC transporter permease | - |
| B1772_RS00450 (B1772_00450) | - | 89386..90444 (-) | 1059 | WP_012984073.1 | ABC transporter permease | - |
| B1772_RS00455 (B1772_00455) | - | 90441..91307 (-) | 867 | WP_078986743.1 | ABC transporter ATP-binding protein | - |
| B1772_RS00460 (B1772_00460) | - | 91319..91957 (-) | 639 | WP_078986744.1 | TetR/AcrR family transcriptional regulator | - |
| B1772_RS00465 (B1772_00465) | - | 92137..92679 (-) | 543 | WP_011308752.1 | DJ-1 family glyoxalase III | - |
| B1772_RS00470 (B1772_00470) | oadA | 92973..94721 (+) | 1749 | WP_015407389.1 | sodium-extruding oxaloacetate decarboxylase subunit alpha | - |
| B1772_RS00475 (B1772_00475) | - | 94714..96210 (+) | 1497 | WP_015407390.1 | acetyl-CoA carboxylase biotin carboxylase subunit | - |
| B1772_RS00480 (B1772_00480) | - | 96207..96494 (-) | 288 | WP_011308755.1 | 2TM domain-containing protein | - |
| B1772_RS00485 (B1772_00485) | - | 96625..98427 (-) | 1803 | WP_078986745.1 | 4Fe-4S binding protein | - |
Sequence
Protein
Download Length: 464 a.a. Molecular weight: 49406.74 Da Isoelectric Point: 6.5004
>NTDB_id=219695 B1772_RS00265 WP_011308691.1 52745..54139(+) (radA) [Dehalococcoides mccartyi strain KBTCE1]
MDKSRNVYICSNCGHESLKWLGRCPGCQEWNTLEETTIAAPLGRKNAPARVISPAAELSSLNASDTTRRSLSISEFNRVL
GGGIVPGSLMLLGGEPGIGKSTLLLQVAASVAQSGGKVVYVSGEENPAQIKMRAQRLGISGEGLFLMAETDLNAILAQLS
VLCPSLVVIDSIQTVFLPELEAAPGAINQVRESALRLMQWAKSSGASVFITAHVTKEGNIAGPRILEHIVDVVMYFEGES
QSAYRLIRSVKNRFGSTNEVGIFEMKSEGLVEVANPSQIFLSNRQANTVGSAVTAVLEGSRPLLVEVQALTNTTSFGQPR
RTANGVDFNRTIMIAAVLSKRLSMRLGTQDIIVNATGGIRLDEPAADLAIALAIASSYRDIGVCPETIALGEIGLSGELR
TIPHLERRLSEASRLGFTRALVPAGANCQNININGIQIIAVSTVKEAIKLALTGVKTETEDVFE
MDKSRNVYICSNCGHESLKWLGRCPGCQEWNTLEETTIAAPLGRKNAPARVISPAAELSSLNASDTTRRSLSISEFNRVL
GGGIVPGSLMLLGGEPGIGKSTLLLQVAASVAQSGGKVVYVSGEENPAQIKMRAQRLGISGEGLFLMAETDLNAILAQLS
VLCPSLVVIDSIQTVFLPELEAAPGAINQVRESALRLMQWAKSSGASVFITAHVTKEGNIAGPRILEHIVDVVMYFEGES
QSAYRLIRSVKNRFGSTNEVGIFEMKSEGLVEVANPSQIFLSNRQANTVGSAVTAVLEGSRPLLVEVQALTNTTSFGQPR
RTANGVDFNRTIMIAAVLSKRLSMRLGTQDIIVNATGGIRLDEPAADLAIALAIASSYRDIGVCPETIALGEIGLSGELR
TIPHLERRLSEASRLGFTRALVPAGANCQNININGIQIIAVSTVKEAIKLALTGVKTETEDVFE
Nucleotide
Download Length: 1395 bp
>NTDB_id=219695 B1772_RS00265 WP_011308691.1 52745..54139(+) (radA) [Dehalococcoides mccartyi strain KBTCE1]
ATGGATAAAAGCCGTAATGTTTATATCTGTTCCAACTGCGGACATGAGAGCCTGAAGTGGCTGGGGCGTTGCCCCGGCTG
TCAGGAATGGAATACTCTTGAAGAAACAACAATTGCTGCACCTCTCGGGCGTAAAAATGCACCTGCCCGGGTTATCAGCC
CGGCAGCCGAGCTTTCCAGTCTGAATGCATCAGATACTACCCGCCGGAGTCTATCTATTTCAGAGTTCAACCGGGTTTTG
GGCGGTGGAATAGTACCGGGTTCACTGATGCTTTTAGGTGGTGAACCGGGTATCGGCAAATCCACGCTCCTTCTTCAGGT
GGCTGCCTCGGTAGCCCAGAGCGGCGGCAAAGTGGTATATGTTTCCGGGGAAGAGAACCCCGCCCAGATAAAAATGCGCG
CTCAGCGTCTGGGTATCAGCGGCGAGGGGCTTTTCCTTATGGCTGAGACAGACCTTAATGCCATTCTAGCCCAGCTTTCA
GTCCTCTGCCCGTCATTGGTTGTTATAGACTCTATCCAGACTGTATTCCTGCCTGAGCTTGAGGCCGCACCCGGTGCTAT
AAATCAGGTGCGTGAATCAGCCCTCCGCCTGATGCAGTGGGCTAAGAGCAGCGGTGCCAGCGTATTTATCACCGCCCATG
TTACCAAAGAGGGCAACATCGCCGGGCCGCGCATACTGGAACACATAGTAGATGTGGTCATGTACTTTGAGGGCGAGTCC
CAGAGTGCTTACCGTTTGATACGTTCGGTCAAAAACCGCTTCGGTTCTACCAACGAAGTAGGCATATTTGAAATGAAAAG
TGAAGGATTGGTGGAAGTAGCCAATCCCTCGCAGATATTTTTATCTAATCGGCAGGCAAACACTGTTGGTTCAGCTGTAA
CAGCAGTGCTGGAGGGTAGCCGCCCTTTACTGGTAGAGGTGCAGGCACTCACCAATACCACCAGTTTCGGCCAGCCGCGC
CGCACGGCCAACGGGGTAGATTTTAACCGTACTATTATGATAGCCGCTGTTCTTTCCAAACGCCTTTCCATGCGGCTGGG
TACCCAGGACATAATAGTAAATGCCACCGGCGGTATTCGTCTGGACGAGCCGGCCGCAGATTTGGCTATTGCTTTGGCCA
TTGCCTCCAGTTACCGTGATATCGGGGTCTGCCCGGAAACCATAGCACTGGGTGAGATTGGCCTTTCAGGGGAACTGAGG
ACAATCCCTCATTTGGAAAGACGTCTTTCCGAGGCCAGCCGTTTGGGTTTTACGAGGGCTTTGGTACCTGCCGGTGCTAA
TTGCCAGAATATAAATATAAATGGTATCCAGATTATTGCGGTTTCAACTGTCAAAGAGGCTATTAAACTGGCGCTTACCG
GGGTAAAAACGGAGACCGAAGATGTTTTTGAATGA
ATGGATAAAAGCCGTAATGTTTATATCTGTTCCAACTGCGGACATGAGAGCCTGAAGTGGCTGGGGCGTTGCCCCGGCTG
TCAGGAATGGAATACTCTTGAAGAAACAACAATTGCTGCACCTCTCGGGCGTAAAAATGCACCTGCCCGGGTTATCAGCC
CGGCAGCCGAGCTTTCCAGTCTGAATGCATCAGATACTACCCGCCGGAGTCTATCTATTTCAGAGTTCAACCGGGTTTTG
GGCGGTGGAATAGTACCGGGTTCACTGATGCTTTTAGGTGGTGAACCGGGTATCGGCAAATCCACGCTCCTTCTTCAGGT
GGCTGCCTCGGTAGCCCAGAGCGGCGGCAAAGTGGTATATGTTTCCGGGGAAGAGAACCCCGCCCAGATAAAAATGCGCG
CTCAGCGTCTGGGTATCAGCGGCGAGGGGCTTTTCCTTATGGCTGAGACAGACCTTAATGCCATTCTAGCCCAGCTTTCA
GTCCTCTGCCCGTCATTGGTTGTTATAGACTCTATCCAGACTGTATTCCTGCCTGAGCTTGAGGCCGCACCCGGTGCTAT
AAATCAGGTGCGTGAATCAGCCCTCCGCCTGATGCAGTGGGCTAAGAGCAGCGGTGCCAGCGTATTTATCACCGCCCATG
TTACCAAAGAGGGCAACATCGCCGGGCCGCGCATACTGGAACACATAGTAGATGTGGTCATGTACTTTGAGGGCGAGTCC
CAGAGTGCTTACCGTTTGATACGTTCGGTCAAAAACCGCTTCGGTTCTACCAACGAAGTAGGCATATTTGAAATGAAAAG
TGAAGGATTGGTGGAAGTAGCCAATCCCTCGCAGATATTTTTATCTAATCGGCAGGCAAACACTGTTGGTTCAGCTGTAA
CAGCAGTGCTGGAGGGTAGCCGCCCTTTACTGGTAGAGGTGCAGGCACTCACCAATACCACCAGTTTCGGCCAGCCGCGC
CGCACGGCCAACGGGGTAGATTTTAACCGTACTATTATGATAGCCGCTGTTCTTTCCAAACGCCTTTCCATGCGGCTGGG
TACCCAGGACATAATAGTAAATGCCACCGGCGGTATTCGTCTGGACGAGCCGGCCGCAGATTTGGCTATTGCTTTGGCCA
TTGCCTCCAGTTACCGTGATATCGGGGTCTGCCCGGAAACCATAGCACTGGGTGAGATTGGCCTTTCAGGGGAACTGAGG
ACAATCCCTCATTTGGAAAGACGTCTTTCCGAGGCCAGCCGTTTGGGTTTTACGAGGGCTTTGGTACCTGCCGGTGCTAA
TTGCCAGAATATAAATATAAATGGTATCCAGATTATTGCGGTTTCAACTGTCAAAGAGGCTATTAAACTGGCGCTTACCG
GGGTAAAAACGGAGACCGAAGATGTTTTTGAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Bacillus subtilis subsp. subtilis str. 168 |
50.218 |
98.707 |
0.496 |
| radA | Streptococcus pneumoniae Rx1 |
48.578 |
98.491 |
0.478 |
| radA | Streptococcus pneumoniae D39 |
48.578 |
98.491 |
0.478 |
| radA | Streptococcus pneumoniae R6 |
48.578 |
98.491 |
0.478 |
| radA | Streptococcus pneumoniae TIGR4 |
48.578 |
98.491 |
0.478 |
| radA | Streptococcus mitis SK321 |
48.578 |
98.491 |
0.478 |
| radA | Streptococcus mitis NCTC 12261 |
48.359 |
98.491 |
0.476 |