Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   SPSF3K_RS08075 Genome accession   NZ_CP025420
Coordinates   1593121..1593603 (-) Length   160 a.a.
NCBI ID   WP_003108263.1    Uniprot ID   A0ABN0IRY3
Organism   Streptococcus parauberis strain SPOF3K     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1588121..1598603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPSF3K_RS08055 (SPSF3K_01633) budA 1588168..1588887 (-) 720 WP_003108267.1 acetolactate decarboxylase -
  SPSF3K_RS08060 (SPSF3K_01634) alsS 1588900..1590576 (-) 1677 WP_003108266.1 acetolactate synthase AlsS -
  SPSF3K_RS08065 (SPSF3K_01635) - 1590697..1591929 (-) 1233 WP_037619540.1 tetratricopeptide repeat protein -
  SPSF3K_RS08070 (SPSF3K_01636) - 1591919..1593100 (-) 1182 WP_003104801.1 AI-2E family transporter -
  SPSF3K_RS08075 (SPSF3K_01637) mutX 1593121..1593603 (-) 483 WP_003108263.1 NUDIX hydrolase Machinery gene
  SPSF3K_RS08080 (SPSF3K_01638) - 1593855..1594865 (+) 1011 WP_003104420.1 lactonase family protein -
  SPSF3K_RS08085 (SPSF3K_01639) - 1594928..1595119 (+) 192 WP_003103548.1 hypothetical protein -
  SPSF3K_RS08090 (SPSF3K_01640) rfbB 1595149..1596195 (-) 1047 WP_003107140.1 dTDP-glucose 4,6-dehydratase -
  SPSF3K_RS08095 (SPSF3K_01641) - 1596217..1596810 (-) 594 WP_003108262.1 dTDP-4-dehydrorhamnose 3,5-epimerase family protein -
  SPSF3K_RS08100 (SPSF3K_01642) rfbA 1596810..1597679 (-) 870 WP_003104922.1 glucose-1-phosphate thymidylyltransferase RfbA -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18867.19 Da        Isoelectric Point: 4.2760

>NTDB_id=218982 SPSF3K_RS08075 WP_003108263.1 1593121..1593603(-) (mutX) [Streptococcus parauberis strain SPOF3K]
MMQLATICYIDNGDSLLLLHRNKKENDIHEGKWISVGGKLESGESPDECAIREIFEETHLTVKEMDFKGVITFPEFTPGL
DWYTYVFKVTDFEGQLISDEESREGTLEWVPYDEVLKKPTWEGDYEIFKWILEDRPFFSAKFTYDKSNQLIDQSVHFYEK

Nucleotide


Download         Length: 483 bp        

>NTDB_id=218982 SPSF3K_RS08075 WP_003108263.1 1593121..1593603(-) (mutX) [Streptococcus parauberis strain SPOF3K]
ATGATGCAATTAGCAACAATTTGTTATATTGATAATGGAGACTCATTATTACTATTACACCGAAATAAAAAAGAGAATGA
TATTCATGAAGGGAAATGGATTTCTGTGGGTGGTAAACTTGAATCTGGCGAGAGTCCTGATGAATGTGCTATTCGTGAGA
TATTTGAAGAAACACATCTAACTGTTAAAGAGATGGACTTTAAGGGTGTGATTACTTTTCCTGAATTTACACCTGGTCTT
GATTGGTATACTTACGTTTTTAAAGTGACGGACTTTGAAGGACAATTGATTTCAGACGAAGAATCTCGAGAAGGAACTTT
AGAATGGGTTCCTTATGATGAAGTCTTAAAGAAACCAACTTGGGAAGGTGATTATGAAATCTTCAAGTGGATTTTAGAAG
ATCGTCCATTCTTTTCAGCTAAATTTACTTATGATAAATCAAATCAATTAATTGATCAATCTGTACACTTCTATGAAAAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(3-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

71.069

99.375

0.706

Multiple sequence alignment