Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   SPSF3K_RS06810 Genome accession   NZ_CP025420
Coordinates   1353446..1354111 (-) Length   221 a.a.
NCBI ID   WP_003108452.1    Uniprot ID   A0ABP2T299
Organism   Streptococcus parauberis strain SPOF3K     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1348446..1359111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPSF3K_RS06785 (SPSF3K_01379) - 1349328..1350500 (-) 1173 WP_003108456.1 NADH-dependent flavin oxidoreductase -
  SPSF3K_RS06790 (SPSF3K_01380) - 1350579..1351199 (-) 621 WP_003108455.1 hypothetical protein -
  SPSF3K_RS06795 (SPSF3K_01381) - 1351199..1351534 (-) 336 WP_003103364.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  SPSF3K_RS06800 (SPSF3K_01382) - 1351773..1352351 (-) 579 WP_003108454.1 NUDIX hydrolase -
  SPSF3K_RS06805 (SPSF3K_01383) - 1352502..1353449 (-) 948 WP_003108453.1 sensor histidine kinase -
  SPSF3K_RS06810 (SPSF3K_01384) braR 1353446..1354111 (-) 666 WP_003108452.1 response regulator transcription factor Regulator
  SPSF3K_RS06815 (SPSF3K_01385) - 1354154..1356109 (-) 1956 WP_003108450.1 ABC transporter permease -
  SPSF3K_RS06820 (SPSF3K_01386) - 1356111..1356863 (-) 753 WP_003108449.1 ABC transporter ATP-binding protein -
  SPSF3K_RS06825 (SPSF3K_01387) - 1357040..1357522 (+) 483 WP_003108447.1 PASTA domain-containing protein -
  SPSF3K_RS06830 (SPSF3K_01388) trmFO 1357547..1358881 (-) 1335 WP_003102504.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25408.30 Da        Isoelectric Point: 5.0945

>NTDB_id=218975 SPSF3K_RS06810 WP_003108452.1 1353446..1354111(-) (braR) [Streptococcus parauberis strain SPOF3K]
MKIHQKIFIIEDDSTIKNMLTQHLSQNYLVASVLNFRDIKREVTDFAPDLILMDITLPYYNGFYWTTEIRKELTVPIIFI
SSSSDEMDAVMALNMGGDDFISKPFSLTILDAKISAFLRRAQQFTKSDLTFQDFTLMFDGNLVKGEEQIALSPTEHKILA
LLFSKQGQVVTKEEILTNLWENDQFIDQNTLNVNMTRLRKRVGELGMDNIHTVRGVGYVLK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=218975 SPSF3K_RS06810 WP_003108452.1 1353446..1354111(-) (braR) [Streptococcus parauberis strain SPOF3K]
ATGAAAATACATCAAAAAATTTTTATCATTGAGGATGACTCGACAATAAAGAATATGCTAACGCAACATTTATCCCAAAA
TTATCTAGTAGCAAGCGTCCTAAATTTTAGAGATATTAAACGTGAAGTCACAGACTTTGCCCCAGACTTAATCTTGATGG
ATATTACCCTTCCCTATTATAATGGATTTTATTGGACAACTGAAATCAGAAAAGAGCTGACAGTTCCAATAATCTTTATA
TCTAGCTCCTCAGATGAAATGGATGCTGTAATGGCTCTAAATATGGGTGGAGATGATTTTATCAGTAAACCCTTTTCACT
AACTATTTTAGATGCAAAAATTTCTGCCTTCTTAAGAAGAGCGCAACAATTTACCAAATCAGACTTGACCTTTCAAGATT
TCACCCTCATGTTTGATGGCAATTTGGTTAAGGGTGAGGAACAAATTGCCTTGTCTCCGACAGAACACAAAATTTTAGCT
CTGCTATTCTCAAAGCAAGGACAAGTAGTAACCAAGGAAGAAATTTTGACTAACTTATGGGAGAATGATCAGTTCATTGA
TCAAAACACCTTGAATGTCAATATGACCAGACTTCGCAAACGCGTCGGTGAGCTTGGGATGGATAACATTCATACGGTGA
GAGGAGTAGGTTACGTACTGAAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.248

98.643

0.466

Multiple sequence alignment