Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   CXG95_RS16240 Genome accession   NZ_CP025226
Coordinates   3077769..3078485 (-) Length   238 a.a.
NCBI ID   WP_009329065.1    Uniprot ID   A0ABX3I5L7
Organism   Bacillus licheniformis strain PB3     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3072769..3083485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXG95_RS16230 (CXG95_16235) - 3075527..3076843 (-) 1317 WP_061565905.1 NTTRR-F1 domain -
  CXG95_RS16235 (CXG95_16240) - 3076970..3077662 (-) 693 WP_003179750.1 N-acetyltransferase -
  CXG95_RS16240 (CXG95_16245) treR 3077769..3078485 (-) 717 WP_009329065.1 trehalose operon repressor Regulator
  CXG95_RS16245 (CXG95_16250) treC 3078507..3080195 (-) 1689 WP_003179746.1 alpha,alpha-phosphotrehalase -
  CXG95_RS16250 (CXG95_16255) treP 3080269..3081681 (-) 1413 WP_011197645.1 PTS system trehalose-specific EIIBC component -
  CXG95_RS16255 (CXG95_16260) - 3081871..3083283 (-) 1413 WP_003179741.1 sodium:alanine symporter family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27767.56 Da        Isoelectric Point: 5.8721

>NTDB_id=217744 CXG95_RS16240 WP_009329065.1 3077769..3078485(-) (treR) [Bacillus licheniformis strain PB3]
MKINKYMMIYKQIAEQIDQSILNAGDILPSENDLAEQHDTSRETVRKALNVLAQNGYIQKIKGKGSVVLHREKMQFPVSG
LVSFKELSETLGKETSTTVHEFGLTHPDAYIQKQLRTSGDEEVWRVVRSRNINGERIILDKDYFIRKHVPLLTKEICEDS
IYQYLEDECGLVISYAHKEIVVEPCTAEDQEYLDLNGYEHIVVVKNFVFLDDTTLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=217744 CXG95_RS16240 WP_009329065.1 3077769..3078485(-) (treR) [Bacillus licheniformis strain PB3]
ATGAAGATCAACAAGTATATGATGATTTACAAACAAATCGCGGAACAAATCGATCAAAGCATACTGAATGCCGGAGATAT
CCTGCCGTCTGAAAACGACCTTGCCGAACAGCACGACACCTCGAGGGAAACCGTTCGGAAAGCGCTGAACGTGCTTGCTC
AGAACGGATATATTCAGAAGATTAAAGGGAAGGGGTCAGTCGTGCTGCACAGGGAGAAAATGCAGTTCCCGGTTTCCGGT
TTGGTCAGCTTTAAGGAGCTTTCAGAAACGCTCGGAAAAGAGACAAGCACGACGGTCCATGAGTTCGGCTTGACGCATCC
GGACGCATATATTCAAAAGCAGCTCCGCACTTCCGGAGATGAAGAGGTATGGCGGGTTGTCAGGTCGCGGAACATCAACG
GAGAGCGTATCATCCTGGATAAAGACTATTTTATCCGCAAACACGTGCCGCTTTTAACGAAAGAAATATGCGAGGACTCG
ATCTATCAATACCTTGAAGATGAATGCGGGCTCGTCATCAGCTATGCTCATAAGGAAATTGTAGTCGAGCCATGTACGGC
AGAGGATCAAGAGTATTTGGATCTGAACGGATACGAGCACATTGTGGTCGTGAAAAATTTCGTTTTTCTTGATGATACGA
CCTTGTTTCAATATACGGAAAGCAGACACCGCCTTGATAAATTCCGGTTTGTCGATTTTGCAAGAAGAGAAAAGTAG

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

41.525

99.16

0.412