Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BZ167_RS18805 Genome accession   NZ_CP019626
Coordinates   3826566..3827174 (-) Length   202 a.a.
NCBI ID   WP_012117837.1    Uniprot ID   A0AAP5V0D3
Organism   Bacillus sp. 275     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3821566..3832174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZ167_RS18790 (BZ167_18870) - 3821892..3822383 (+) 492 WP_033574712.1 YpoC family protein -
  BZ167_RS18800 (BZ167_18885) - 3823750..3826527 (-) 2778 WP_077392174.1 PBP1A family penicillin-binding protein -
  BZ167_RS18805 (BZ167_18890) recU 3826566..3827174 (-) 609 WP_012117837.1 Holliday junction resolvase RecU Machinery gene
  BZ167_RS18810 (BZ167_18895) - 3827216..3828178 (+) 963 WP_015417701.1 DUF2515 domain-containing protein -
  BZ167_RS18815 (BZ167_18900) sspM 3828222..3828326 (-) 105 WP_003153525.1 acid-soluble spore protein SspM -
  BZ167_RS18820 (BZ167_18905) - 3828532..3828777 (+) 246 WP_012117836.1 DUF5446 family protein -
  BZ167_RS18825 (BZ167_18910) - 3828823..3829191 (+) 369 WP_007409492.1 YppE family protein -
  BZ167_RS18830 (BZ167_18915) - 3829230..3829412 (-) 183 WP_003153532.1 YppF family protein -
  BZ167_RS18835 (BZ167_18920) - 3829599..3830033 (+) 435 WP_053573252.1 YppG family protein -
  BZ167_RS18840 (BZ167_18925) - 3830063..3830476 (-) 414 WP_053573251.1 Hsp20/alpha crystallin family protein -
  BZ167_RS18845 (BZ167_18930) - 3830615..3831121 (+) 507 WP_012117833.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=217392 BZ167_RS18805 WP_012117837.1 3826566..3827174(-) (recU) [Bacillus sp. 275]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=217392 BZ167_RS18805 WP_012117837.1 3826566..3827174(-) (recU) [Bacillus sp. 275]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCTCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891

Multiple sequence alignment